Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2e01
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    27   9.5  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 181  KLKKIYFVQLLPIR*SFKGWKSLLYILRKYLNNRCKNVTYTIK*FEIDKYI 29
            KLK   + Q   ++   K  K + Y+ + Y NN+  +   T+  F +D+Y+
Sbjct: 4014 KLKNSLYTQFKELKEESKKRKLVEYLDQNYKNNKSYSTLQTLITFNLDQYM 4064


>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
           protein Y105C5B.2 protein.
          Length = 1044

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 57  IVYVTFLQRLFKYFLSIYSSDFHPLKDHLIGNNCTKYIFFNFY 185
           I ++T L  L K+F ++  + F PL+  ++  +C K    NFY
Sbjct: 191 ISFLTTLD-LSKFFKTLKENAFRPLEFSIVHVDCNKSEISNFY 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,924
Number of Sequences: 27780
Number of extensions: 218457
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)