Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2d20
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 81 2e-16
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 66 6e-12
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 53 3e-08
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 31 0.12
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.81
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.6
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 7.6
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 10.0
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 80.6 bits (190), Expect = 2e-16
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Frame = +3
Query: 141 RILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRR 320
+I+ID D G DD++ A+ E +++G+TT GNV N+ ++L +A R
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 321 DVPIYRGCSEPLIGGSVSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIE-LSKLYPGN 497
D+P+Y G ++PL+ ++ + + + S + HAV II+ L PG
Sbjct: 58 DIPVYAGSNKPLLRAPITATHVHGASGFEGAVLPPPSRKENEGHAVDFIIDTLRNNEPGT 117
Query: 498 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYSDDYKEP--EFNVDMDVEAYHIV 671
+ I IGPLTNIA+A+ P + R ++V+ AG P EFN+ +D A +V
Sbjct: 118 ITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAAQMV 177
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 65.7 bits (153), Expect = 6e-12
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 3/179 (1%)
Frame = +3
Query: 144 ILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRD 323
I ID D G DD +A+ A K++G++T HGN + N+ ++ + N+ D
Sbjct: 19 IWIDCDPGHDDVVALTLAACAGHC----KILGVSTVHGNTTLEFTTKNALAVMELLNQ-D 73
Query: 324 VPIYRGCSEPLIGGSV-SDFYFGNDGLGDHENV-EYQSIAAEKEHAVFRIIELSKLYPGN 497
V ++ G ++PL+ S + G +GL + +Y A + AVF + YP
Sbjct: 74 VDVHAGAAKPLMRESAFATHIHGTNGLAGISLLPDYPKKKATPD-AVFAMYTTISNYPEP 132
Query: 498 LEIIAIGPLTNIAMAVKIDPFFLSRLSRLV-IGAGYIYSDDYKEPEFNVDMDVEAYHIV 671
+ ++A GPLTNIA+ + P + R + +G + + EFNV D EA +V
Sbjct: 133 VTLVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLV 191
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 53.2 bits (122), Expect = 3e-08
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Frame = +3
Query: 138 ARILIDHDGGADDSLAIFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANR 317
++++ID+DG D L + AL +++ ++G+T +G+ D + +L N
Sbjct: 25 SKVIIDNDGLTD--LQVLFALQAKQQ-----ILGVTAIYGDYTLDDSLFLASDVLSTGNL 77
Query: 318 RD-VPIYRGCSEPLIGGS----VSDFYFGNDGLGDHENVEYQSIAAEKEHAVFR------ 464
+P + G ++PL+ + + +G+ + EY++ E ++
Sbjct: 78 TYCIPSFAGAAQPLLRTNNTFQIWQELYGSYVWQGYWQPEYETANTNNESYIYNTQISAA 137
Query: 465 --IIELSKLYPGNLEIIAIGPLTNIAMAVKIDPFFLSRLSRLVIGAGYIYS 611
II++ K P + I+A GP+TN+A+A+ I P LVI GY+ S
Sbjct: 138 QFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDS 188
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 31.5 bits (68), Expect = 0.12
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 309 ANRRDVPIYRGCSEPLIGGSVSDFYFGNDGLGDHENVEYQSIAAEKEHAVFRIIELSKLY 488
AN +PI GC P + GS Y ND G + +S V I+EL ++Y
Sbjct: 554 ANGLTIPIVHGCKRPAMPGS----YQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVY 609
Query: 489 PGNLEIIAIGPL 524
G ++ +AIG L
Sbjct: 610 AG-ID-VAIGTL 619
>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 89
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = -1
Query: 601 YPAPITRRDSRLRKNGSIFTAIAILVKGPIAIISKLPGYNFDSSIIRKTACSFSAAML 428
+PAP+ +++ R + + + +L KGPI +S + ++ + I C F + +
Sbjct: 15 FPAPLEKKEKREKGKIRNISFLIVLTKGPIWKVSSMESTSY-NGCIENLDCKFRKSFI 71
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 186 IFTALLYEEKFNGPKVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEPLIGG 365
+ +ALL +KF GP V+ + + ++D + V Q + P+YR + L G
Sbjct: 599 LISALLEADKFKGPSVVLAYLPYHSADDDAITV-LQETKKAVDIGYWPLYR-WTPALEDG 656
Query: 366 SVSDF 380
SDF
Sbjct: 657 EYSDF 661
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 187 IAKESSAPPSWSMRILASVTSLIRASDLQLRKKNNLTKYTNIL-EYISAKTNTSA 26
+AK+ P+WS S T+L + + + N+L+ TN+ Y+S++ SA
Sbjct: 291 LAKDEVGSPTWSPTPSKSSTNLRQDGVPPILRFNSLSINTNVARNYLSSEKGYSA 345
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 560 KRINFHSHSNISQGTNSDY 504
++ NFH HS + G N +Y
Sbjct: 298 RKFNFHHHSRKNSGLNEEY 316
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 43 LQKCIREYSCIWLSYFFFSAVNRKLELMTSPKPESSLTT 159
L +C+ ++S W S F++ + KLE + K S+++
Sbjct: 373 LTECLNDWSTTWSSVSTFASEDNKLEELNRLKSLLSISS 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,294
Number of Sequences: 5004
Number of extensions: 58225
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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