Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d20
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.87 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.87 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = -1

Query: 574 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 458
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
 Frame = -1

Query: 574 SRLRKNGSIFT---AIAILVKGPI------AIISKLPGYNFDSSIIRK 458
           +RLR N  +FT   +IA+L +         AI    P Y FDSS+I +
Sbjct: 131 ARLRMNSGMFTTAFSIAVLYRPDTKYMKFPAIYEIYPNYFFDSSVIEE 178


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 127 TSPKPESSLTTTEVPMIL*RYSQRCCMRRNSMD 225
           T+PK E    TT  P+I  R  Q+    +N  D
Sbjct: 789 TTPKKERKTATTTQPVISSRKEQKKSEEKNIND 821


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 228 KVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEP 353
           K I     + N N  ++Y N   I  +     VPIY G   P
Sbjct: 310 KTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNFPP 351


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 297 ILGVANRRDVPIYRGCSEPLI 359
           +LGV  +R+   Y  C EP I
Sbjct: 199 LLGVPGKRNEIYYNCCPEPYI 219


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 201 LYEEKFNGPKVIGLTTTHGNVNEDQVYVN--SQRILGVANRRDVPIYRGCSEP 353
           +Y      P+ I    T  + N   ++++  +Q++ G+    ++  Y G +EP
Sbjct: 381 IYSSLLRYPRSI-FRQTDDHQNSPSIFISDDNQKLTGIVQISNMTEYNGLTEP 432


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 167 TSVVVNEDSGFGDVINSSFRFTAEKKK*LNQIHEYSRIHF 48
           T    +ED      +++   F  E KK L+ I+E S  HF
Sbjct: 853 TESAESEDGPRWGHLSTLVEFALELKKALSSINEQSFNHF 892


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,150
Number of Sequences: 438
Number of extensions: 4500
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)