Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d19
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    42   7e-05
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.9  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   3.9  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   5.1  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    26   6.7  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   8.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   8.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   8.9  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.9  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
 Frame = +1

Query: 550 NFNHLLNFMYPTRGN---IERSERRGPLLQRQQFHRLSFRQDHDLYLRAYCQFVVKEDYD 720
           N NHLLNF +  R N        RR                D   Y+ A  +FVV    D
Sbjct: 124 NLNHLLNFQFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVNANYRFVVSPIGD 183

Query: 721 YKINSLDPDVPIKW 762
           Y+   LDPD P+KW
Sbjct: 184 YQSQKLDPDSPVKW 197


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 217 LMLEESRMDKKLNRS-TQPQSRASAVDCKKHSDLTHKPWPRNNKKRE 354
           L + ES M   + R  TQP + A+ V  +K S+ + KP  +   K E
Sbjct: 469 LSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKKKGSKLE 515


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 604 SERRGPLLQRQQFHRLSFRQDHDLYLRAYCQFVVKEDYDYKINSL 738
           S  +GPL    Q  RL     HD+ + AY + V    + Y INS+
Sbjct: 139 SPMQGPLTTPSQL-RLPRLNHHDMIIAAYPRRVYANAHAYHINSI 182


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 220 STKTKRDTPRGGNDITYKADILESHVYDYKIKKIQLPVLYN 98
           S +  +D P   N++  + D+ ++   +YK+ K  +P LY+
Sbjct: 2   SEEVVQDAPLENNELNAEIDLQKTIQEEYKLWKQNVPFLYD 42


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 292 DCKKHSDL--THKPWPRNNKKREGPGG 366
           D K+ +DL  T    P+ NKKR+GP G
Sbjct: 194 DTKESTDLAGTEDSAPKANKKRKGPKG 220


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 448 ESASSQMDGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSE 609
           +SA+++ +G   S     D P +  V   GS  +N ++  +  YP  GN+   E
Sbjct: 23  QSATTEPEGQYRSAT---DNPSLYQVPTHGSLYRNLSNSASAYYPANGNMNSRE 73


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 685 AYCQFVVKEDYDYKINSLDPDVPI 756
           A   + + E+YD++ ++++PD+PI
Sbjct: 293 AEIDYPLLEEYDFRNDNINPDLPI 316


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 408 WYRYIFPKWFIFRCATRTFTFLIVAGPRLVSQIGV-LFTVD 289
           W+  +F K F    A R    L V GPR++ Q+ + LF V+
Sbjct: 379 WFFSLFIKDFRLDYAFRILDCLFVNGPRVLFQVALALFKVN 419


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 697 IDNKLLGTDHDLVEKINGGIVDVAT--VVLAVHCVLCYP*W 581
           I   LLG++HDL +    G++ V    +++A   ++ +P W
Sbjct: 573 IPTALLGSNHDLSKSSFSGLIIVCLIWILVAAIYIILFPLW 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,963
Number of Sequences: 5004
Number of extensions: 69536
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)