Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d19
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    45   6e-05
07_03_0464 + 18456502-18456697,18457281-18457368,18457448-184575...    28   7.1  
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622...    28   9.3  
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195...    28   9.3  
01_06_1377 + 36764461-36765339                                         28   9.3  

>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = +1

Query: 550 NFNHLLNFMYPTRGNIERSERRGPLLQRQQFHRLSFRQDHDLYLRAYCQFVVKEDYDYKI 729
           N N+LLNF Y     I R + RGP     +  R     + DL+L+A  +FVV +   Y+I
Sbjct: 149 NANYLLNFHYDP---ISRPQPRGPRTYPTRRQRKIRPYNKDLFLQANFKFVVLDTGSYEI 205

Query: 730 NSLDPDVPIKW 762
             +DPD  ++W
Sbjct: 206 ELMDPDKMLQW 216


>07_03_0464 +
           18456502-18456697,18457281-18457368,18457448-18457524,
           18457844-18457883,18458109-18458175,18458908-18458993,
           18459380-18459461,18459778-18459834,18460135-18460173,
           18460402-18460472,18460912-18461047,18461048-18461092
          Length = 327

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 147 WLSKMSALYVISLPPRGVSRLVFVDVGRI 233
           +L+KM      +LPP+GV RL+FV  G I
Sbjct: 115 YLAKMHDGSKSALPPKGVERLIFVLQGSI 143


>07_03_1492 +
           26960876-26960986,26961910-26962074,26962153-26962271,
           26962559-26962633,26963063-26963156,26963239-26963298,
           26963474-26963539,26963622-26963720,26964027-26964035
          Length = 265

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
 Frame = -3

Query: 538 CQAQKLSLFLVHHHPLAWSSEFHPFVNWLI----HEDVIFCHLNPYLLVQIHFSEMVHF* 371
           C+   LSLF+ +   L W         W I      D  +C +     ++ HF  +    
Sbjct: 74  CKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQ---YIENHFDLLDFLV 130

Query: 370 VCHQDLHVSYCCGAKACESNRSAFYSRRLMPSTVVEL 260
           VC+++L V+  CG    E  +    ++ ++ S+  EL
Sbjct: 131 VCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFEL 167


>02_01_0293 +
           1955439-1956457,1957002-1957322,1957405-1957411,
           1957954-1958041,1958143-1958324,1958508-1958644,
           1958790-1958856,1959132-1959246,1959390-1959501,
           1960420-1960495,1960576-1960758,1961166-1961326,
           1961463-1961532,1962721-1962928,1963015-1963304,
           1963388-1963509,1963605-1963749,1964040-1964113,
           1964464-1964911
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 399 YIFPKWFIFRCATRTFTFLIVAGPRLVSQIGV 304
           Y++P W +   A    TFL +   R++ Q+GV
Sbjct: 825 YLYPSWAVKYLANLPDTFLNILALRMILQLGV 856


>01_06_1377 + 36764461-36765339
          Length = 292

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 428 SPEPLPLGTDTFFRNGSFLGVPPGPSRF 345
           +P P   G++ ++R+G +   PP P ++
Sbjct: 182 APPPPQYGSEQYYRSGGYYSAPPPPPQY 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,640,079
Number of Sequences: 37544
Number of extensions: 431948
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)