Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d19
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical pr...    36   0.041
Z38112-3|CAA86230.2|  333|Caenorhabditis elegans Hypothetical pr...    31   0.68 
U29377-3|AAA68720.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41533-12|AAA83173.1|  521|Caenorhabditis elegans Hypothetical p...    29   4.8  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    28   8.3  
AF047653-3|AAC04460.2|  378|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical
           protein F17A2.3 protein.
          Length = 463

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -3

Query: 295 SRRLMPSTVVELIDLIFCPSLILPTSTKTKRDTPRGGNDITYKADILESHVYDYKIKKIQ 116
           ++ L PS +    DL F  S     ST+ +R+ PR G  +T  + ++++H+ D K+K   
Sbjct: 401 AKSLEPSALAAR-DLTFFISHRTQNSTEIQRNAPRAGAPVTNHSSVVQAHLNDRKLKNTI 459

Query: 115 LP 110
            P
Sbjct: 460 FP 461


>Z38112-3|CAA86230.2|  333|Caenorhabditis elegans Hypothetical
           protein E03A3.5 protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 160 ILESHVYDYKIKKIQLPVLYNCLPSGKYTIKNFPN 56
           I ++  Y + ++++Q P++ N   SG+ T  N+PN
Sbjct: 203 ITDTGFYAWNVERVQPPIISNTTTSGELTSPNYPN 237


>U29377-3|AAA68720.2|  472|Caenorhabditis elegans Hypothetical
           protein K05F1.5 protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 352 HVSYCCGAKACESNRSAFYSRRLMPSTVVELIDLIFCPSLILP 224
           H+   CG+  C+ NR++ +       T  E++ L  CP   LP
Sbjct: 62  HIDVSCGSDRCQFNRNSSHWHCAKCQTGFEIVGLHCCPITSLP 104


>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -3

Query: 280 PSTVVELIDLIFCPSLILPTSTKTKRDTPRGGNDITYKADILESHVYDYKIK 125
           PS + +L+DL   PS   P  T    DTP    D  YK++ +E  V+DY +K
Sbjct: 266 PSLISQLLDLKKYPSR--PQYTLAS-DTPLCLFDCGYKSEDVEWKVHDYTLK 314


>U41533-12|AAA83173.1|  521|Caenorhabditis elegans Hypothetical
           protein R05F9.11 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 658 RQDHDLYLRAYCQFVVKEDYDYKI 729
           R+D D  LRAY QF     YDYK+
Sbjct: 17  REDLDTLLRAYLQFKSVRFYDYKM 40


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 244 KKLNRSTQPQSRASAVDCKKHSDLTHKPWPRNNKKREGPGGTPKNEPFRK 393
           ++  R ++ +S +   D K+ +  +  P P  ++ R   G  PKN   RK
Sbjct: 130 RESRRRSESRSPSPKRDLKREASRSRSPLPAKDRSRTRSGSPPKNGGDRK 179


>AF047653-3|AAC04460.2|  378|Caenorhabditis elegans Hypothetical
           protein W02F12.4a protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 151 SHVYDYKIKKIQLPVLYNCLPSGKYT 74
           S  Y +   K  LPVLY  L  GKYT
Sbjct: 318 SWTYKHTNNKFSLPVLYEDLVGGKYT 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,108,406
Number of Sequences: 27780
Number of extensions: 402060
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)