Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d16
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   5.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 508 LFGSILDASPLKTYLYTPTYNATQPTLRSNEKALSQKPNK 627
           +  ++LD  P  TY +   ++A       +EK  S+K  K
Sbjct: 411 ILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKK 450


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 508 LFGSILDASPLKTYLYTPTYNATQPTLRSNEKALSQKPNK 627
           +  ++LD  P  TY +   ++A       +EK  S+K  K
Sbjct: 303 ILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKK 342


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 589 RSNEKALSQKPNKSP 633
           RSN+ ++SQ PN+ P
Sbjct: 251 RSNDDSVSQPPNRKP 265


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 569 TPRNLRSEVTKRHYRRSRINHQQPSLNR 652
           T  NL S+   R Y +SR  H Q    R
Sbjct: 190 TQYNLNSKSLPRQYSQSRGRHNQSRSKR 217


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 503 NTSSAPYWTPRRSKPIYTRRHTTPRNLRSEVTKRHYRRSRI 625
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 503 NTSSAPYWTPRRSKPIYTRRHTTPRNLRSEVTKRHYRRSRI 625
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 503 NTSSAPYWTPRRSKPIYTRRHTTPRNLRSEVTKRHYRRSRI 625
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,357
Number of Sequences: 336
Number of extensions: 2434
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)