Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d16
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    29   0.81 
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   5.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   7.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   9.9  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.9  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 282 T*MTISKIIYVCILLDNSLNSH*ITTKTSLSEKKYDLQSSECHHLN 145
           T +++ K++ +CI +D  LN+H IT +  L EKK       CH  N
Sbjct: 559 TTVSVDKVV-ICIPMDK-LNTHLITFEPPLEEKKLK-AIDRCHFTN 601


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 565 YNATQPTLRSNEKALSQKPNKSPTAIPQP 651
           YN    +   N + LS  P  SP+ I QP
Sbjct: 339 YNVFSESAHGNHQVLSFSPGSSPSFIEQP 367


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 161 SELCRSYFFSDRLVFVVI*CEFSELSSRIQT 253
           S+ C  + FSD+ V     C+F+++S    T
Sbjct: 398 SQQCTKFLFSDQKVITPSFCKFAQVSDMCST 428


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 581  LRSEVTKRHYRRSRINHQQPSLN 649
            L+S V + HY  ++ +H+ PSL+
Sbjct: 1056 LKSSVVESHYGDAKFSHRTPSLD 1078


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 568 NATQPTLRSNEKALSQKPNKSPTAIP 645
           +A    +R  E  +S KP   P AIP
Sbjct: 658 SANSSNIRDMEHTISDKPRSEPDAIP 683


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 619 PNKSPTAIPQPVFDAKN 669
           P +SP  +P P FD +N
Sbjct: 368 PARSPVEVPAPTFDRRN 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,611
Number of Sequences: 5004
Number of extensions: 42244
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)