Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d16
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    30   1.7  
U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    29   4.0  

>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 16  SVFTLWKFCVSRYFM*HFHRYIVTRLCNIISCALLNTNRLRVE 144
           + F  +K CVSR      +R  V  +C  I+C L NT  L ++
Sbjct: 104 TAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAHLLLD 146


>U00052-5|AAK21423.1|  289|Caenorhabditis elegans Hypothetical
           protein K02F3.8 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 551 YTRRHTTPRNLRSEVTKRH 607
           + RRHTT R +RSE  K+H
Sbjct: 36  FCRRHTTTREIRSESEKKH 54


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 523 LDASPLKTYLYTPTYNATQPTLRSNEKALSQKPNKSPT 636
           L   PLK ++Y+  Y  T  +L  N  AL    N  PT
Sbjct: 48  LPVKPLKAFIYSAYYYPTSKSLGDNALALLMSINLPPT 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,823
Number of Sequences: 27780
Number of extensions: 231739
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)