Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d13
         (274 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           24   0.25 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   2.3  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    19   7.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    19   9.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   9.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      19   9.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   9.5  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 24.2 bits (50), Expect = 0.25
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 146 EQWRXQPLDTSMDRIRSLVPAVGS 217
           E+ R   L+ + DR+R +VP++G+
Sbjct: 6   ERRRMNSLNDAFDRLRDVVPSLGN 29


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 200 PGSGCDPWRYP 168
           P S CDPW  P
Sbjct: 30  PPSYCDPWYNP 40


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 142 AGTMAXSTLGYLHGSHPL 195
           AG ++   +GY+   HPL
Sbjct: 35  AGCVSPFVIGYVKHFHPL 52


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 144 SLPNRRHHRWQVEGQPKLLL 85
           SLPNRR H   +     +LL
Sbjct: 55  SLPNRRLHEEFLRSSVDVLL 74


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 130 AVGEAGTMAXSTLGYLHGSHPLPGTRSGLLAXPSVVXAXIALPSKFV 270
           ++G+A T        L+ S   PG  SGL +  S     +  PS  V
Sbjct: 662 SMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLPSPSTSV 708


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 130 AVGEAGTMAXSTLGYLHGSHPLPGTRSGLLAXPSVVXAXIALPSKFV 270
           ++G+A T        L+ S   PG  SGL +  S     +  PS  V
Sbjct: 554 SMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPGGMVLPSPSTSV 600


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 112 LPPVVPAVGEAGTMAXST 165
           LPP +PA   A  +   T
Sbjct: 125 LPPTLPAAAAAALLPPQT 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,614
Number of Sequences: 336
Number of extensions: 828
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4471194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)