Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d13
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    29   0.51 
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    28   1.2  
09_04_0350 + 16899076-16900164                                         27   1.5  
07_03_0388 + 17550034-17550267                                         27   2.0  
10_08_0115 + 14924463-14924939                                         27   2.7  
04_04_0069 + 22506885-22508354                                         26   4.7  
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207...    25   6.3  

>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 97  RLSLNLPPVVPAVGEAGTMAXSTLGYLHGSHPLPGTRSGLLAXPSV 234
           RL+++ P  VP    A  MA +  GY      LPG+  GL A  S+
Sbjct: 35  RLNVHAPEFVPRSPAASPMAAAAAGYYSPFLQLPGSSIGLGADWSI 80


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 TCHRWCRRLGRLEQWRXQPLDTSMDR 187
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = -3

Query: 221 ARSPLRVPGSGCDPWRYPRVXCAIVPASPTAGTTGGRLRDS 99
           AR P  V  SG + WR  R   A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWR--RRGDAASAASATAGGAGGRSRRS 108


>07_03_0388 + 17550034-17550267
          Length = 77

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 231 RWXCKEPTAGT--RERMRSMEVSKG*XRHCSSLPNRRHHRWQVEG 103
           RW   +  AG+  RER +  EVS+   R  ++ P R H R  + G
Sbjct: 11  RWRLGQVDAGSEGRERQQCGEVSRPGYRRVATAPLRCHRRESLSG 55


>10_08_0115 + 14924463-14924939
          Length = 158

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 152 WRXQPLDTSMDRIRSLVPAVGSLH 223
           WR  PL   +D    LVPA  S H
Sbjct: 33  WRGVPLSIGVDAASPLVPATASTH 56


>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = -3

Query: 221 ARSPLRVPGSGCDPWRYPRVXCAIVPASPTAGTTGGRLRDS 99
           AR P  V G G +  R  R   A  PAS TAG  GGR R S
Sbjct: 82  ARRPWLV-GGGAEASR--RRGDAASPASATAGGAGGRSRRS 119


>03_02_0644 +
           10118790-10119559,10120252-10120432,10120526-10120725,
           10120834-10120992,10122375-10122741
          Length = 558

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 110 TCHRWCRRLGRLEQWRXQPLDTSMDR 187
           TC R  RR    ++WR QP D  + R
Sbjct: 232 TCMRNGRRDDSYQKWRWQPTDCDLPR 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,606,344
Number of Sequences: 37544
Number of extensions: 115411
Number of successful extensions: 380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)