Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d13
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    28   0.79 
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    28   0.79 
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    27   2.4  
AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical...    25   9.7  

>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA   H G QG
Sbjct: 1014 QGAHFGAQGAQGAHFGAQG 1032



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA     G QG
Sbjct: 984  QGAHFGAQGAQGAQFGAQG 1002



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA     G QG
Sbjct: 1024 QGAHFGAQGAQGTQFGAQG 1042


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA   H G QG
Sbjct: 1034 QGAHFGAQGAQGAHFGAQG 1052



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA     G QG
Sbjct: 1004 QGAHFGAQGAQGAQFGAQG 1022



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 220  QGAHCGYQGADAIHGGIQG 164
            QGAH G QGA     G QG
Sbjct: 1044 QGAHFGAQGAQGTQFGAQG 1062


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 200 PGSGCDPWRYP-RVXCAIVPASPTAGTT 120
           PGS CDP RY     C++ P + T  TT
Sbjct: 179 PGSACDPDRYNIDGLCSLNPPTTTTTTT 206


>AL117204-42|CAB55146.2|  714|Caenorhabditis elegans Hypothetical
           protein Y116A8C.4 protein.
          Length = 714

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 131 RLGRLEQWRXQPLDTSMDRIRSLVPAVGSLHXHR 232
           ++ +LE W  + L +    +  L  AV SL  HR
Sbjct: 34  KIDKLELWEAEALSSQESMLGELKVAVTSLEQHR 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,329,396
Number of Sequences: 27780
Number of extensions: 85294
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)