Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2d12
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 30 0.38
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.0
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 3.5
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.6
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 8.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 8.1
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 29.9 bits (64), Expect = 0.38
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +3
Query: 36 RFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVG--AKTQMKAYSTE-VTPRPLTMLT 206
R + N NR + L V K QWRSQ + AKT + + T+ + RPL +
Sbjct: 35 RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPLLIPV 94
Query: 207 EDELAMRETIRKLATEQISPL 269
L + +R + ++ L
Sbjct: 95 LANLNVPHEVRVSSLARVQTL 115
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +3
Query: 45 SANANRIKMFP-LRRVVGN-KILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTM-LTEDE 215
+ NAN ++ P L+ + K+LEQ + V + + K Y++ RPL+ +TE
Sbjct: 439 NGNANPSRLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYTSASPDRPLSQTITESS 498
Query: 216 LAMRETIRKLATE 254
+A ++ +T+
Sbjct: 499 VAKTKSTTPKSTD 511
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/58 (20%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 99 KILEQWRSQATAAVGAKTQMKAYSTEVTPRP-LTMLTEDELAMRETIRKLATEQISPL 269
+++ +W+ + + +A +T +P +T+ E+E ++ET+ ++ +E+I P+
Sbjct: 670 QLISEWQKYRDEVIARVAEERA----ITGQPAITVPAEEEEIIQETVEEVISEEIEPV 723
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +3
Query: 465 LVNSLFMKLGTEEQKKKYLTKLCTEYAGSFCLTEPSSGSDAFALKTVAKKEGEHYIISGS 644
LVN+ + +++ + L C +Y + + + VA E+Y +GS
Sbjct: 18 LVNAFAFDYASLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS 77
Query: 645 KMWISNSDVAGVFLVMTNADP 707
K S+S ++ + +++ P
Sbjct: 78 KSLSSSSILSNSTISTSSSTP 98
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 497 RRTKKEIFNETLHGICWQFLSHRA-QLRIRC 586
+++ K++FN L G C LSHR Q + C
Sbjct: 870 KKSIKDVFNVLLEGRCSLILSHRCFQYMVLC 900
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 116 EVPGNGCRWSKDSDESIQHRSYPTTFD 196
+V GN + K SDE ++ R+ P TF+
Sbjct: 510 DVLGNAHKKFKGSDEVVESRAGPVTFE 536
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 455 SQHLSQLSVHEARYRRTKKEIFNETLH 535
S L +S+H + R ++K+IFN LH
Sbjct: 1265 SSILQFVSLHRQKIRISRKKIFNYALH 1291
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 385 KLQPEPLYSTGVSMPINP 332
+LQPEPL+ GVS + P
Sbjct: 702 ELQPEPLHYVGVSYGLTP 719
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 300 RCGVHLPFSSQADLFVRSLVSVLFPSWRVHLLSAWS 193
+ GV + + + +V + VLF W + L+S W+
Sbjct: 268 KTGVVAVWCTNKEKYVNFVKKVLFKKWNLTLVSTWT 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,535
Number of Sequences: 5004
Number of extensions: 59671
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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