Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2d10
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.76
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 2.3
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.3
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 27 4.0
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 27 4.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 7.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 7.1
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 7.1
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 26 7.1
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 256
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 763 KSITIFFSVICALYYVCFLLTSLLCMAEEVYYYRV*IPSSDML*LDTRLYPL--LVSW 596
+++ IF I +L+ + L + + + VY+Y + P+ +L + LYPL L+SW
Sbjct: 62 RTVVIFILRIVSLF-LWILADPAILLVQSVYWYFIRAPARFILMVGITLYPLYVLLSW 118
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -3
Query: 357 PIRIIALLTFSL-PTLKCAISISITTRAEAF-FS*AWTWHTTIMELVWYESIGAVTFPFY 184
P+RI ++ T+S P+ C+ + ++F + T+HTT + I ++T P +
Sbjct: 93 PLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152
Query: 183 TFIFDSYAIYSETLHS 136
+++ + HS
Sbjct: 153 ASVYNDLPLSPTVKHS 168
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 324
C+ + Y +GK YC + F RC C G + F Y NG Q W
Sbjct: 209 CYTVFGPNDSYYEYEGKVYCHYHY-STLFAARCCGCDGPILRQF---VEVYRNGVSQNWH 264
Query: 325 GKCQQCYDSYGNFVCR 372
C Y + +C+
Sbjct: 265 VPCHMIYKFWNVKLCQ 280
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 74 FTISKLIFEQCHILYLTDS 18
FT++KL+ QCH L+L S
Sbjct: 309 FTLAKLVATQCHRLWLVQS 327
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 776 VQILKINYNFLFSYMCTVLCVFSSN-FSSVYGGGGILL 666
V ILK N + + + + +C+ + N FSS GGGG +L
Sbjct: 114 VGILKAGGNAVDAAIASGICIGAVNSFSSGIGGGGFML 151
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 7.1
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +1
Query: 19 ESVKYNM*HCSKISFEIVKCKSGSRSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKC 198
ES+ + SK++ E +C++ L+ C + +C + C G +E I KC
Sbjct: 319 ESIHARCSNISKVNTEPFRCENVCDELL-PCGEH---TCKKRCHSGLC-GACFEPINAKC 373
Query: 199 YCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQG 327
YC H + PC L + NG+++ W G
Sbjct: 374 YCG-------LHSKTYPCSSLPSPSIS---KKDENGSVKEWFG 406
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 298 GNGTLQCWQGKCQQCYDSYGNFVCRDGIDQILLISTTQI-VMGSA 429
G+GT Q + C D ++VCRD I ++ST + +GSA
Sbjct: 1119 GHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSA 1163
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 263 EKNASALVVIDMEMAHFNVGKENVNN 340
+K+ + +++D+E A N +EN+NN
Sbjct: 325 KKSKGSALMVDIEAADINKTEENINN 350
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 779 YVQILKINYNFLFSYMCTVLCVFSSNFSSV 690
Y L NY+FL + +CT++ ++ +++
Sbjct: 160 YFTALNFNYSFLAATLCTLMVALDNHLATI 189
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 378 HRPNSADFNDANSYGIRINSRNHSYIHTALQIMCGDYHR 494
HR AD D+N + +R S+I++ LQI DY +
Sbjct: 133 HRAFKADVMDSNGQLVLQLNRPFSWINSRLQIHSIDYSK 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,761
Number of Sequences: 5004
Number of extensions: 84791
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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