Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2d10
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 34 0.10
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 33 0.18
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 33 0.18
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 33 0.18
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 33 0.18
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 33 0.18
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 33 0.18
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 33 0.23
U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical pr... 33 0.31
AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical ... 31 0.71
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 31 1.2
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 31 1.2
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 30 2.2
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 30 2.2
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 30 2.2
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 2.2
Z73422-9|CAI46556.1| 111|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF150109-1|AAD40015.1| 111|Caenorhabditis elegans small zinc fi... 29 2.9
AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical ... 29 3.8
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 5.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 5.0
L16560-4|AAA27997.1| 111|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical pr... 28 6.6
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQ 324
C A + E GKC C +G + D+C CP G C ++ +L+C+
Sbjct: 792 CSAFGSSRSDCEQTTGKCECKNGALG----DKCDLCPNGSMMTAGGCVSQLDCHSLRCFH 847
Query: 325 G-KCQQCYDSYGNFVC 369
G KC S+ + +C
Sbjct: 848 GAKCVPSPSSFPDCIC 863
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDS 351
EC GKC CA G+ R CP + C + NG +C G+C +C+DS
Sbjct: 583 ECNCGKCICAPGWT-----GRACECPISTDSCLS-ANGKICNGKGECICGRC-RCFDS 633
Score = 33.1 bits (72), Expect = 0.23
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +1
Query: 136 TMKCFAIN---CIGVEYECIKGKCYCADGFVPNQFHD-RCVPCPGLGEKC--FGPC--CN 291
T C + N C G + ECI G+C C D N++ +C CP KC + C C
Sbjct: 606 TDSCLSANGKICNG-KGECICGRCRCFDSPDGNRYSGAKCEICPTCPTKCVEYKNCVMCQ 664
Query: 292 RYGNGTLQCWQGKCQQC 342
++ G L + C QC
Sbjct: 665 QWQTGPLN--ETACDQC 679
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQ---FHDRCVPCPGLGEKCFGPCCNRYGNGTLQ 315
C C G+ CI+ +C C G++ Q DRC + G C N+ GN +
Sbjct: 1573 CLNRQC-GMNQVCIQDQCQCRSGYLVLQETCISDRCNCVQPSVDAISGGCMNQCGNNQV- 1630
Query: 316 CWQGKCQQCYDSY 354
C Q +C C + Y
Sbjct: 1631 CIQDQC-LCRNGY 1642
Score = 31.5 bits (68), Expect = 0.71
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGL-------GEKCFGPCCNRYGN 303
CF + + +C+K C CA FV + F CVP + GE C C G
Sbjct: 1267 CFRNSHCESQRQCLKNVCKCASNFVQSSF--SCVPRMSVISSLALPGESCRKGFC--VGG 1322
Query: 304 GTLQCWQGKCQQCYDSYGNFVCR 372
T + + KC Y G+ R
Sbjct: 1323 STCENFMCKCPDDYFKKGDSCVR 1345
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/72 (27%), Positives = 28/72 (38%)
Frame = +1
Query: 34 NM*HCSKISFEIVKCKSGSRSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKCYCADG 213
N HC+ S + LV + S KC A N +C+KG+C C G
Sbjct: 1125 NKTHCTNCSVCVNGFCRCPEGLVHYGDKCVSEIDATKCLASNQCPSGAQCVKGECRCKPG 1184
Query: 214 FVPNQFHDRCVP 249
++ CVP
Sbjct: 1185 LGITRY-GFCVP 1195
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDS 351
EC GKC CA G+ R CP + C + NG +C G+C +C+DS
Sbjct: 583 ECNCGKCICAPGWT-----GRACECPISTDSCLS-ANGKICNGKGECICGRC-RCFDS 633
Score = 33.1 bits (72), Expect = 0.23
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +1
Query: 136 TMKCFAIN---CIGVEYECIKGKCYCADGFVPNQFHD-RCVPCPGLGEKC--FGPC--CN 291
T C + N C G + ECI G+C C D N++ +C CP KC + C C
Sbjct: 606 TDSCLSANGKICNG-KGECICGRCRCFDSPDGNRYSGAKCEICPTCPTKCVEYKNCVMCQ 664
Query: 292 RYGNGTLQCWQGKCQQC 342
++ G L + C QC
Sbjct: 665 QWQTGPLN--ETACDQC 679
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 152, isoform a protein.
Length = 2560
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVP--CPGLGEKCFGPCCNRYGNGTLQC 318
EC+ GKC+CA GF + P C G G G C + G +C
Sbjct: 326 ECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGKEC 374
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVP--CPGLGEKCFGPCCNRYGNGTLQC 318
EC+ GKC+CA GF + P C G G G C + G +C
Sbjct: 268 ECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGKEC 316
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVP--CPGLGEKCFGPCCNRYGNGTLQC 318
EC+ GKC+CA GF + P C G G G C + G +C
Sbjct: 450 ECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSGGICVCKSGFKGKEC 498
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
K04H4.2c protein.
Length = 1446
Score = 33.1 bits (72), Expect = 0.23
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Frame = +1
Query: 76 CKSGSRSLVFLCSRAPSLSVTMKCFAINCIGVEYE---CIKGKCYCADGFVPNQFHDRCV 246
C G S C AP + +T+ +C G Y C G YCA G+ + ++C
Sbjct: 864 CMGGGSSNCVGCQNAPQI-ITIP--QNSCPGGGYSVGGCSSG--YCATGY--SCIQNQCC 916
Query: 247 PCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYGNFVC 369
P + C GN C G+C Y N C
Sbjct: 917 PSYNSAPRISVYTCPSGGNAVGACMSGRCASGYTCSNNVCC 957
>U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical
protein M03F4.6 protein.
Length = 413
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 148 FAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQG 327
F C G+ C +C C F +R C L G C R L C G
Sbjct: 37 FDEECYGMNSVCRNSRCTCPTNFEEYDIDERTTIC-RLAPAKIGDSCQRDCKPPLLCRDG 95
Query: 328 KCQ 336
KC+
Sbjct: 96 KCE 98
>AF100656-3|AAF99968.1| 265|Caenorhabditis elegans Hypothetical
protein F49F1.1 protein.
Length = 265
Score = 31.5 bits (68), Expect = 0.71
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Frame = +1
Query: 133 VTMKCFAINCIGVEYEC----IKGKCYCADGFV---PNQFHDRCVPCPGLGEKCFGPCCN 291
+T F I+C + Y C ++ +C + G P D C KC P
Sbjct: 16 LTCMDFMIDCPRIVYYCDETYVQNQCQFSCGICKQDPGVCGDTYFDCDMYDTKCNSPSFQ 75
Query: 292 RYGNGTLQCWQGKCQQCYDSYGNFV--CRDGIDQI 390
R GT G C+ +D +F+ C D I +
Sbjct: 76 RQCAGTCGLCPGACEDIWDGCSHFLAPCSDDIKSL 110
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Frame = +1
Query: 64 EIVKCKSGS--RSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKCYCADGFVPNQFHD 237
++ KC++G+ + C AP S KC G + KC CADG +
Sbjct: 901 QLCKCQNGAICDTSNGSCECAPGWS-GKKCDKACAPGTFGKDCSKKCDCADGMHCDPSDG 959
Query: 238 RCVPCPG-LGEKCFGPC-CNRYG---NGTLQCWQGKCQQCYDSYGNFVCRDG 378
C+ PG G KC C +G G C G C G+ CR G
Sbjct: 960 ECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNG--ATCDSVTGSCECRPG 1009
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYG 357
+ I GKC+C G + CV + FGP CN+ C G C S G
Sbjct: 1309 DAISGKCFCKPGHSGSDCKSGCV------QGRFGPDCNQ----LCSCENGGV--CDSSTG 1356
Query: 358 NFVCRDG 378
+ VC G
Sbjct: 1357 SCVCPPG 1363
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = +1
Query: 109 CSRAPSLSVTMKCFAI------NCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEK 270
CS+ L V C A C+ E+ + C C GF + C
Sbjct: 67 CSKCCLLRVQANCSADLCHNGGTCVPSEHNDNEQVCECPVGFTGAKCQYDANECMANNGG 126
Query: 271 CFGPCCNRYGNGTLQCWQG 327
C C N G +CW G
Sbjct: 127 CEHECVNTIGTYYCRCWPG 145
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Frame = +1
Query: 64 EIVKCKSGS--RSLVFLCSRAPSLSVTMKCFAINCIGVEYECIKGKCYCADGFVPNQFHD 237
++ KC++G+ + C AP S KC G + KC CADG +
Sbjct: 901 QLCKCQNGAICDTSNGSCECAPGWS-GKKCDKACAPGTFGKDCSKKCDCADGMHCDPSDG 959
Query: 238 RCVPCPG-LGEKCFGPC-CNRYG---NGTLQCWQGKCQQCYDSYGNFVCRDG 378
C+ PG G KC C +G G C G C G+ CR G
Sbjct: 960 ECICPPGKKGHKCDETCDSGLFGAGCKGICSCQNG--ATCDSVTGSCECRPG 1009
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = +1
Query: 178 ECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGKCQQCYDSYG 357
+ I GKC+C G + CV + FGP CN+ C G C S G
Sbjct: 1309 DAISGKCFCKPGHSGSDCKSGCV------QGRFGPDCNQ----LCSCENGGV--CDSSTG 1356
Query: 358 NFVCRDG 378
+ VC G
Sbjct: 1357 SCVCPPG 1363
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = +1
Query: 109 CSRAPSLSVTMKCFAI------NCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEK 270
CS+ L V C A C+ E+ + C C GF + C
Sbjct: 67 CSKCCLLRVQANCSADLCHNGGTCVPSEHNDNEQVCECPVGFTGAKCQYDANECMANNGG 126
Query: 271 CFGPCCNRYGNGTLQCWQG 327
C C N G +CW G
Sbjct: 127 CEHECVNTIGTYYCRCWPG 145
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 154 INCIGVEYECIKGKC-YCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGK 330
INC + YE KC YC+DGF + +C+ C C G + G G GK
Sbjct: 859 INC-PLGYE--GNKCEYCSDGFFEDPLTGKCIEC-----TCNGN-IDPMGIGNCDSETGK 909
Query: 331 CQQC 342
C +C
Sbjct: 910 CLKC 913
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPC--PGLGEKCFGPCCNRYGN----- 303
C IG + + + G+C C G Q D+C P C CN YG+
Sbjct: 990 CNDTGSIGSDCDQVSGQCNCKQGVFGKQC-DQCRPSYFNFTDAGCQFCHCNIYGSIEDGK 1048
Query: 304 -----GTLQCWQG----KCQQCYDSYGNFVCRDGID 384
G +C + C++C D Y N DG +
Sbjct: 1049 CDQTTGKCECRENVEGTMCEKCADGYFNITSGDGCE 1084
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 109 CSRAPSLSVTMKCFAINCIGVEYE---CIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFG 279
C AP + +T+ +C G Y C G YCA G+ + ++C P +
Sbjct: 217 CQNAPQI-ITIP--QNSCPGGGYSVGGCSSG--YCATGY--SCIQNQCCPSYNSAPRISV 269
Query: 280 PCCNRYGNGTLQCWQGKCQQCYDSYGNFVC 369
C GN C G+C Y N C
Sbjct: 270 YTCPSGGNAVGACMSGRCASGYTCSNNVCC 299
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +1
Query: 109 CSRAPSLSVTMKCFAINCIGVEYE---CIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFG 279
C AP + +T+ +C G Y C G YCA G+ + ++C P +
Sbjct: 217 CQNAPQI-ITIP--QNSCPGGGYSVGGCSSG--YCATGY--SCIQNQCCPSYNSAPRISV 269
Query: 280 PCCNRYGNGTLQCWQGKCQQCYDSYGNFVC 369
C GN C G+C Y N C
Sbjct: 270 YTCPSGGNAVGACMSGRCASGYTCSNNVCC 299
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 154 INCIGVEYECIKGKC-YCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGK 330
INC + YE KC YC+DGF + +C+ C C G + G G GK
Sbjct: 859 INC-PLGYE--GNKCEYCSDGFFEDPLTGKCIEC-----TCNGN-IDPMGIGNCDSETGK 909
Query: 331 CQQC 342
C +C
Sbjct: 910 CLKC 913
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPC--PGLGEKCFGPCCNRYGN----- 303
C IG + + + G+C C G Q D+C P C CN YG+
Sbjct: 990 CNDTGSIGSDCDQVSGQCNCKQGVFGKQC-DQCRPSYFNFTDAGCQFCHCNIYGSIEDGK 1048
Query: 304 -----GTLQCWQG----KCQQCYDSYGNFVCRDGID 384
G +C + C++C D Y N DG +
Sbjct: 1049 CDQTTGKCECRENVEGTMCEKCADGYFNITSGDGCE 1084
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 154 INCIGVEYECIKGKC-YCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCWQGK 330
INC + YE KC YC+DGF + +C+ C C G + G G GK
Sbjct: 859 INC-PLGYE--GNKCEYCSDGFFEDPLTGKCIEC-----TCNGN-IDPMGIGNCDSETGK 909
Query: 331 CQQC 342
C +C
Sbjct: 910 CLKC 913
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Frame = +1
Query: 145 CFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPC--PGLGEKCFGPCCNRYGN----- 303
C IG + + + G+C C G Q D+C P C CN YG+
Sbjct: 990 CNDTGSIGSDCDQVSGQCNCKQGVFGKQC-DQCRPSYFNFTDAGCQFCHCNIYGSIEDGK 1048
Query: 304 -----GTLQCWQG----KCQQCYDSYGNFVCRDGID 384
G +C + C++C D Y N DG +
Sbjct: 1049 CDQTTGKCECRENVEGTMCEKCADGYFNITSGDGCE 1084
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 121 PSLSVTMKCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYG 300
PS C A+ +G + + G+C C + + + ++C P +C CN +
Sbjct: 839 PSGCKKCDCDAVGSLGNDCDKQSGQCVCREKGIYGRQCNQCQPGFWGFPECRTCQCNDHA 898
Query: 301 NGTLQCWQGKCQQCYD-SYGNFV--CRDG 378
N Q G C +C D + G++ C+DG
Sbjct: 899 NICDQS-SGACIECRDLTTGHYCDRCQDG 926
>Z73422-9|CAI46556.1| 111|Caenorhabditis elegans Hypothetical
protein B0564.1b protein.
Length = 111
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 259 LGEKCFGPCCNRYGNGTLQCWQGKC-QQCYD 348
L E+CF C Y TL +G C QC D
Sbjct: 20 LSERCFNACARDYTTSTLTKDEGSCVSQCID 50
>AF150109-1|AAD40015.1| 111|Caenorhabditis elegans small zinc
finger-like protein protein.
Length = 111
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 259 LGEKCFGPCCNRYGNGTLQCWQGKC-QQCYD 348
L E+CF C Y TL +G C QC D
Sbjct: 20 LSERCFNACARDYTTSTLTKDEGSCVSQCID 50
>AF016442-3|AAB65917.2| 597|Caenorhabditis elegans Hypothetical
protein K12B6.2 protein.
Length = 597
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 179 NV*KGNVTAPMDSYQTSSMIVVCHVQ 256
N+ +G ++ M +Y+T+S IV+CH++
Sbjct: 118 NLQEGPISNMMSNYETTSEIVMCHIE 143
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 157 NCIGVEYECIKGKCYCADGFVPN 225
NC G C+ GKC C GFV N
Sbjct: 961 NC-GENKICVSGKCKCKPGFVDN 982
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 157 NCIGVEYECIKGKCYCADGFVPN 225
NC G C+ GKC C GFV N
Sbjct: 1058 NC-GENKICVSGKCKCKPGFVDN 1079
>L16560-4|AAA27997.1| 111|Caenorhabditis elegans Hypothetical
protein D2007.1 protein.
Length = 111
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +1
Query: 142 KCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVPCPGLGEKCFGPCCNRYGNGTLQCW 321
+C A C + C++ +C+ R CP ++C CC + QC
Sbjct: 61 QCSAYECCNFDQTCLRNRCF-----------PRLSNCPVTRDQCGNACCKT----SEQCR 105
Query: 322 QGKCQQ 339
GKC +
Sbjct: 106 NGKCSR 111
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +1
Query: 517 QNSQRLSIGSLQVYVEERLRDAPPRYSRTPTTDIAVYPAIAYLNSGFIHDSSIPPPPYTE 696
Q+ L G ++ E+ L D +Y++TP A+ A A+ ++ +S+ P T
Sbjct: 208 QSYSSLCWGDKEILQEKPLVDLCQKYNQTPQ---AILYAFAHCSN-----TSMIPKSATP 259
Query: 697 EKLEENTHNTV 729
++ +N HNT+
Sbjct: 260 SRIHDNLHNTI 270
>Z70754-3|CAA94773.1| 293|Caenorhabditis elegans Hypothetical
protein F58E6.3 protein.
Length = 293
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 196 CYCADGFVPNQFHDRCV-PCPGLGEKCF-GPCCNRYGNGTLQC 318
C C GFV N FH CV C G C G C + G G +C
Sbjct: 241 CKCKPGFVGNGFH--CVDACEGF---CLNGGSCLKTGRGETKC 278
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 142 KCFAINCIGVEYECIKGKCYCADGFVPNQFHDRCVP 249
KC A N +C+KG+C C G ++ CVP
Sbjct: 872 KCLASNQCPSGAQCVKGECRCKPGLGITRY-GFCVP 906
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,432,879
Number of Sequences: 27780
Number of extensions: 504329
Number of successful extensions: 1627
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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