Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d08
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1FP83 Cluster: Putative uncharacterized protein precur...    43   0.006
UniRef50_A2D755 Cluster: DEAD/DEAH box helicase family protein; ...    35   1.2  
UniRef50_Q4SMR0 Cluster: Chromosome 8 SCAF14545, whole genome sh...    34   2.7  
UniRef50_Q8KBV3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_A4HD45 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_UPI0000E821D6 Cluster: PREDICTED: hypothetical protein,...    33   6.2  
UniRef50_Q6KZ14 Cluster: Beta-galactosidase; n=2; Thermoplasmata...    32   8.1  

>UniRef50_Q1FP83 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium phytofermentans ISDg|Rep:
           Putative uncharacterized protein precursor - Clostridium
           phytofermentans ISDg
          Length = 535

 Score = 42.7 bits (96), Expect = 0.006
 Identities = 31/102 (30%), Positives = 49/102 (48%)
 Frame = -2

Query: 354 DNGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDN 175
           +NG F    G+NNG   +  G  N +   N+S  ++W  +  N+    +G    +WSN++
Sbjct: 347 ENGGFN---GNNNG---NNSGNNNGNNNGNNSGNNNWNNNTDNNNGYETGFD-DNWSNNS 399

Query: 174 GGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESN 49
           GG    + DST+ G  + D  G  NG G  G +    +N  N
Sbjct: 400 GGSE--IEDSTSDGDADSDSSGWNNGNGSGGSNQGSSNNGGN 439


>UniRef50_A2D755 Cluster: DEAD/DEAH box helicase family protein;
           n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
           helicase family protein - Trichomonas vaginalis G3
          Length = 1123

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -2

Query: 363 GFRDNGAFFSLFGDN-NGV-GFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCD 190
           G+ DNG     + DN NG    DF G +N +   ND+   +W  + + + N+     W  
Sbjct: 467 GWNDNGNGKGNWNDNGNGDRNRDFNGNMNGNNW-NDNGNGNWNDNSNRNWNDNGNGGWNR 525

Query: 189 WSNDNGGGHDW 157
            SNDN  G++W
Sbjct: 526 NSNDNMNGNNW 536


>UniRef50_Q4SMR0 Cluster: Chromosome 8 SCAF14545, whole genome
           shotgun sequence; n=2; Clupeocephala|Rep: Chromosome 8
           SCAF14545, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 963

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 177 NGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHS 70
           N G H + S S  +   EI D+ CE+G+G + D  S
Sbjct: 642 NKGSHSYNSGSQRISDSEISDYDCEDGVGVITDYRS 677


>UniRef50_Q8KBV3 Cluster: Putative uncharacterized protein; n=1;
           Chlorobaculum tepidum|Rep: Putative uncharacterized
           protein - Chlorobium tepidum
          Length = 231

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 285 NNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGG--HDWLS 151
           N D +R+  S+  W     ND   R   AWCD+ ND   G  ++W +
Sbjct: 93  NGDPIRHAKSVEEW-----NDAISRQEGAWCDYDNDPASGRLYNWFA 134


>UniRef50_A4HD45 Cluster: Putative uncharacterized protein; n=1;
            Leishmania braziliensis|Rep: Putative uncharacterized
            protein - Leishmania braziliensis
          Length = 2015

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 174  GGGHDWLSDSTTVGKREIDDFGC-ENGLGGVGDSHSYDSNESNEE 43
            GGG    S ST  G  E +D G  + G+ G GD+H  D   S++E
Sbjct: 970  GGGGGGGSASTANGDDEAEDDGAGDGGMDGSGDAHGEDDYRSDDE 1014


>UniRef50_UPI0000E821D6 Cluster: PREDICTED: hypothetical protein,
           partial; n=1; Gallus gallus|Rep: PREDICTED: hypothetical
           protein, partial - Gallus gallus
          Length = 289

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
 Frame = -2

Query: 351 NGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERS-GLAWCDWSNDN 175
           NG   S  G +   G D  G  +NDG     S +    +   D NE S G    D ++ N
Sbjct: 142 NGGTDSNAGSDGNDGTD--GTDSNDGNDGTDSNAGSDGNDGTDSNEGSDGNDGTDGNDSN 199

Query: 174 GGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSNESNE 46
            G     S++ + G    D      G GG GD+   D  +SNE
Sbjct: 200 DGNDGTDSNAGSDGNDGTDSNAGNGGNGGNGDNDGNDGTDSNE 242


>UniRef50_Q6KZ14 Cluster: Beta-galactosidase; n=2;
           Thermoplasmatales|Rep: Beta-galactosidase - Picrophilus
           torridus
          Length = 495

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 312 VGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGH 163
           +GF   G  +  G+ +  S S W + VH+ +N R+GL   D   +NG G+
Sbjct: 8   LGFSLAGFQSEMGISDPDSNSDWWLWVHDPVNIRTGLVSGDLP-ENGIGY 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,271,264
Number of Sequences: 1657284
Number of extensions: 8305973
Number of successful extensions: 24004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23976
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)