Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d08
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    27   0.15 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.2  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 48  RCFRCYRSCGCRQPHQAHFRTRNHRFPSSRRWC 146
           +C  C+R   C+   Q H+RT     P   + C
Sbjct: 136 QCVICHRVLSCKSALQMHYRTHTGERPFKCKIC 168


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 214 LVQIIVNVNQPGADAAIIPQPVIVDESDE 300
           +V +I N+  PG+D    P P +    +E
Sbjct: 402 IVHLIANLPSPGSDQRSTPSPRVYGNVNE 430


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 240  VHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKRE 124
            V +   L +  G+   D+ ND+G G D +    T+   E
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPDRIGRRKTIHNLE 1422


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 240  VHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKRE 124
            V +   L +  G+   D+ ND+G G D +    T+   E
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPDRIGRRKTIHNLE 1422


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 240  VHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKRE 124
            V +   L +  G+   D+ ND+G G D +    T+   E
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPDRIGRRKTIHNLE 1422


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 240  VHVHNDLNERSGLAWCDWSNDNGGGHDWLSDSTTVGKRE 124
            V +   L +  G+   D+ ND+G G D +    T+   E
Sbjct: 1384 VEIVKQLQKLQGIDDGDYENDSGSGPDRIGRRKTIHNLE 1422


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 290 SPMKSNPTPLLSP 328
           SP    PTP++SP
Sbjct: 311 SPYSGTPTPMMSP 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,844
Number of Sequences: 336
Number of extensions: 1823
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)