Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d08
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    31   0.85 
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    29   2.6  
12_02_1153 + 26524232-26524474,26524563-26524694                       29   3.4  
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258...    28   6.0  

>01_05_0309 -
           20713774-20713818,20713838-20713915,20714044-20714222,
           20714296-20714556,20715222-20715393,20715501-20715662,
           20716435-20716863,20717729-20717785,20717872-20718842,
           20719098-20719182,20719269-20719637,20719756-20720001,
           20720090-20720362,20720663-20720827,20721328-20721556,
           20721727-20722168,20723152-20724138,20724352-20724517,
           20725070-20725728,20725820-20726186
          Length = 2113

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 12  SLQANKIKNEILRCFRCYRSC 74
           S+QANKI N +L C  C +SC
Sbjct: 742 SMQANKISNTLLECSFCGKSC 762


>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 180 DNGGGHDWLSDSTTVG 133
           D GGG DWL D  TVG
Sbjct: 870 DGGGGGDWLYDGATVG 885



 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 180 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 79
           D GGG DWL D  TVG         +  L G GD
Sbjct: 830 DEGGGGDWLYDGGTVGGLYGGGEAVDGVLDGGGD 863



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 180 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 79
           D GGG  WL D  TVG  +        GL G G+
Sbjct: 460 DEGGGGGWLYDGATVGGLDEGGGVVGGGLDGGGE 493



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 27/79 (34%), Positives = 31/79 (39%)
 Frame = -2

Query: 327 GDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSD 148
           GD  G G D  G V   GL ++     WL           G        D GGG  WL D
Sbjct: 588 GDVVGGGLDGGGEVLGGGL-DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGG--WLYD 644

Query: 147 STTVGKREIDDFGCENGLG 91
             TVG   +D+ GC  G G
Sbjct: 645 GATVG--GLDEGGCVEGGG 661



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 180 DNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGD 79
           D GGG  WL D  TVG  +        GL G G+
Sbjct: 128 DEGGGGGWLYDGATVGGLDGGGDVVGGGLDGGGE 161


>12_02_1153 + 26524232-26524474,26524563-26524694
          Length = 124

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -2

Query: 348 GAFFSLFGDNNGVGFDFIGLVNN-DGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNG 172
           GA   + GD +G G   +GL  +  G R + S  S          ER  LAW   ++ +G
Sbjct: 2   GAAIVVSGDESGGGSS-LGLGGSITGTRENRSTQSG-----RGRWERRRLAWAAGASGSG 55

Query: 171 GGHDWLSDSTTVGKREIDDFG---CENGLGGVGD 79
           G  D   D+   G  + DD G   C +   G+GD
Sbjct: 56  GSRD--DDNDVSGGDDDDDGGGGDCNDDAVGIGD 87


>01_06_0100 -
           26424769-26425545,26425666-26425697,26425778-26425894,
           26426067-26426118,26426229-26426281,26426883-26427585
          Length = 577

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 177 NGGGHD---WLSDSTTVGKREIDDFGCENGLGGVGDS 76
           N G +D   W++D   VG   +DD G ++    +GD+
Sbjct: 541 NPGDYDDEGWITDEDMVGGIALDDLGLDSSSSDIGDA 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,668
Number of Sequences: 37544
Number of extensions: 234825
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)