Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d08
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical...    29   2.3  
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adap...    27   7.1  
AF039053-17|AAC25882.2|  279|Caenorhabditis elegans Serpentine r...    27   9.4  

>AL132876-38|CAD21663.2|  224|Caenorhabditis elegans Hypothetical
           protein Y105E8A.14 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 211 PLVQIIVNVNQPGADAAIIPQPVIVDESD--EVKPD 312
           PL  + + ++ PG  +A  P PV+  E D  +VKPD
Sbjct: 75  PLQAVDLKMDIPGTPSAAAPDPVVKQEVDDEDVKPD 110


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 183 NDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSN 58
           N N GG + +  +TT       + G   G+  V D+ SY +N
Sbjct: 498 NSNSGGRNLVVTATTTNNTNATNAGRSYGIQSVPDASSYSTN 539


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 183 NDNGGGHDWLSDSTTVGKREIDDFGCENGLGGVGDSHSYDSN 58
           N N GG + +  +TT       + G   G+  V D+ SY +N
Sbjct: 606 NSNSGGRNLVVTATTTNNTNATNAGRSYGIQSVPDASSYSTN 647


>Z92838-7|CAB07405.1|  593|Caenorhabditis elegans Hypothetical
           protein T03D8.1a protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 226 IVNVNQPGADAAIIPQPVIVDES 294
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 198 WCDWSNDNGGGHDWLSDSTTVGKREIDDFGC 106
           W DWS+ +  GH+  S +   G R+I   GC
Sbjct: 164 WTDWSHCSSNGHEVRSQACEYG-RKIQRRGC 193


>AF286205-1|AAK28740.1|  593|Caenorhabditis elegans C kinase adapter
           1 protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 226 IVNVNQPGADAAIIPQPVIVDES 294
           +V+  QP  DAAI+P P+  D+S
Sbjct: 30  LVSEQQPSFDAAIVPMPIPNDKS 52


>AF039053-17|AAC25882.2|  279|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 16 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 556 INILLCQFYSYN*GNAYIIDIAFKQVLSQLL 464
           IN    ++YS N G AYI+ + F  +LS  L
Sbjct: 162 INACFNKYYSINKGTAYILTVMFAILLSTKL 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,189,045
Number of Sequences: 27780
Number of extensions: 185848
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)