Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d05
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    59   8e-10
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         50   4e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   5.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   6.7  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   6.7  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   8.9  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   8.9  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
 Frame = +1

Query: 238 IFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQD-AENNDNELLGH 414
           IF KI+  +I    + E  L LAF DIAP +  H LVIPK   A++ + ++ +  ++L  
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELSDESCADILPL 63

Query: 415 LMLVARSLGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLG------GRQMGWP 555
           +  V +++G    P  + ++ NNG+   Q V H+H H++       G  +GWP
Sbjct: 64  VKKVTKAIG----PENYNVLQNNGRIAHQFVDHVHFHIIPKPNEEYGLGVGWP 112


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = +1

Query: 265 IRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND-NELLGHLMLVARSLG 441
           + + + Y   L  AF ++ P  P H LVIP+R + RL+D   ++  +L   +  V + + 
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIE 71

Query: 442 AQRAPSGWRLVVNNGKDGAQSVYHLHLHVL 531
              + S   + + +G D  Q+V H+H+H++
Sbjct: 72  KVFSASASNIGIQDGVDAGQTVPHVHVHII 101


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 220 TTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIA-PQAPVHFLVIPKRRIARLQDAENND 396
           +T+GP   DKI+      DI+  +D       IA   A    LV     I+++QD E  D
Sbjct: 38  STLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV----NISKVQDDEVGD 93


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 445  QRAPSGWRLVVNNGKDG 495
            Q+ PSGW L + NG +G
Sbjct: 1137 QKEPSGWWLALKNGAEG 1153


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 240 YCGPDRSGRFVC 205
           YCGP+  G++VC
Sbjct: 434 YCGPEADGKYVC 445


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 228  DRSGRFVCSADFVAVRPLHSHSRTPRQIIDVRRISLFQSKF 106
            DR G+F+ +ADF A+R L S         D+   + F   F
Sbjct: 981  DRPGKFLPAADFDAIRKLLSEKFGVSSDCDIAAYTQFPGVF 1021


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 127 YPTNIYDLSRGSAVAVKR 180
           YP ++YDLSR S+ +V++
Sbjct: 177 YPVDLYDLSRTSSYSVQK 194


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 247 KIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND 396
           K++      D+ YE    + F+    ++P H  + P  R+  L D  NND
Sbjct: 17  KVVQALKELDLTYETRY-VNFSKNEQKSPEHLALNPNGRVPTLIDHHNND 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,138
Number of Sequences: 5004
Number of extensions: 62592
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)