Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2d05
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 97 1e-20
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 82 5e-16
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 57 1e-08
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 38 0.009
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 33 0.25
11_03_0144 + 10724538-10724753,10726127-10726186 32 0.57
12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-96... 31 1.3
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 30 2.3
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 29 3.0
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 29 3.0
11_06_0588 + 25272067-25274850 29 4.0
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 97.5 bits (232), Expect = 1e-20
Identities = 53/111 (47%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Frame = +1
Query: 199 RRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRR--IAR 372
+ A T T GPTIFDKII+KEI ++++YED+ LAF DI PQAPVH LVIPK R +
Sbjct: 33 KAAAATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTG 92
Query: 373 LQDAENNDNELLGHLMLVARSLGAQRA-PSGWRLVVNNGKDGAQSVYHLHL 522
L AE E+LG+L+ A+ + + G+R+V+NNG G +Y LH+
Sbjct: 93 LDKAEPRHVEILGYLLYAAKIVAEKEGIAEGYRVVINNGPKG---LYMLHI 140
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/93 (41%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Frame = +1
Query: 229 GPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNE 402
G +FDKII KEI + ++++D+ LAF DI PQAP H ++IPK + + L AE E
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVE 251
Query: 403 LLGHLMLVARSLGAQRA-PSGWRLVVNNGKDGA 498
+LG+L+ VA+ + Q G+R+V+N+G G+
Sbjct: 252 ILGYLLYVAKVVAKQEGLEDGYRIVINDGPSGS 284
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +1
Query: 238 IFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENN-DNELLGH 414
+F +I+ A +YEDD+CL D P + H L+IPKR LQ + +
Sbjct: 74 VFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCK 133
Query: 415 LMLVARSLGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLGGRQ 543
L L++ ++ + ++VNNGK Q ++H H+H++ R+
Sbjct: 134 LPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 337 HFLVIPKRRIARLQDAENN--DNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVY 510
H+LVIP I + + + D++L+ H++ V R L + AP+ + SV
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 511 HLHLHVL 531
HLHLH L
Sbjct: 118 HLHLHCL 124
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 337 HFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQS 504
H ++ P + L+DAEN +++G LM QR GW V GK A+S
Sbjct: 99 HLVLPPGSNLRSLEDAENEAAKMIGVLMAPEYGRMLQRLVDGWANRVYEGKLPARS 154
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 238 IFDKIISKEIRADIIYEDDLCLAFNDIAPQAP 333
+F +II E A +YEDD+CL D P AP
Sbjct: 59 VFCRIIRGEAPAFKVYEDDVCLCILDSHPLAP 90
>12_01_0127 +
963723-963828,965057-965193,965470-965577,965669-965785
Length = 155
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 274 DIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-- 447
++ + L A ++ P PV PKR + R D +N+ L + A+ +G +
Sbjct: 16 EVFHSTPLSYAMVNLRPLLPV----CPKREVKRFADLSSNETS---DLWVTAKEVGVRLE 68
Query: 448 ---RAPSGWRLV--VNNGKDGAQSVYHLHLHVL 531
+A S + + +G + Q+V H+H+HV+
Sbjct: 69 QYHKASSLTFAIQCLQDGPEAGQTVSHVHIHVI 101
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Frame = +1
Query: 274 DIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-- 447
++ + L A ++ P PV PKR + R D +N+ + L + A+ +G +
Sbjct: 16 EVFHSTPLSYAMVNLRPLLPV----CPKREVKRFADLSSNE---ISDLWVTAKEVGIRLE 68
Query: 448 ---RAPSGWRLV--VNNGKDGAQSVYHLHLHVL 531
+A S + + +G Q+V H+H+HV+
Sbjct: 69 QYHKASSLTFAIQCLQDGPQAGQTVPHVHIHVI 101
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 43 YNGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVK 177
+ G+Y ++S M +KVFQRAL+ K P +I D++R ++V+
Sbjct: 400 HQGMYSVISG-MVDKVFQRALR---KLPVPMSIRDMARQWGISVR 440
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 422 W*PGHSVPKEL-LQDGVLWLTMAKTELKVFIIYTFMFWVEDRWA 550
W +VP+ L DG+ WL ++ T + I TFM W+++ A
Sbjct: 151 WSEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKA 194
>11_06_0588 + 25272067-25274850
Length = 927
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -3
Query: 354 WNNKKMYWRLRCYVVKSKT*IIFVYDIGSDLLRYDLVEYCGPD 226
WN +++ ++RCY ++ K ++ ++D+ D L +D ++ PD
Sbjct: 277 WNEEELVEKIRCY-LRGKIFLVILHDV-RDKLIWDHIKLAFPD 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,628,746
Number of Sequences: 37544
Number of extensions: 403001
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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