Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d05
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...   150   9e-37
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    44   1e-04
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    44   1e-04
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    39   0.004
U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score =  150 bits (364), Expect = 9e-37
 Identities = 70/110 (63%), Positives = 88/110 (80%), Gaps = 1/110 (0%)
 Frame = +1

Query: 235 TIFDKIISKEIRADIIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGH 414
           T+F KII KEI A II+EDD  LAF+D++PQAP+HFLVIPKRRI  L++A ++D  L+G 
Sbjct: 21  TLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGK 80

Query: 415 LMLVARSLGAQRA-PSGWRLVVNNGKDGAQSVYHLHLHVLGGRQMGWPPG 561
           LM+ A  +  Q    +G+R+VVNNGKDGAQSV+HLHLHVLGGRQ+ WPPG
Sbjct: 81  LMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +1

Query: 265 IRAD-IIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLG 441
           I AD I Y       F ++ P    H LV PKR + RL D  + +      L +VA+ + 
Sbjct: 306 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAET---ADLFIVAKKVQ 362

Query: 442 AQRAP----SGWRLVVNNGKDGAQSVYHLHLHVLGGR 540
           A        +   + V +GKD  Q+V H+H+H+L  R
Sbjct: 363 AMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
 Frame = +1

Query: 265 IRAD-IIYEDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLG 441
           I AD I Y       F ++ P    H LV PKR + RL D  + +      L +VA+ + 
Sbjct: 306 IPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAET---ADLFIVAKKVQ 362

Query: 442 AQRAP----SGWRLVVNNGKDGAQSVYHLHLHVLGGR 540
           A        +   + V +GKD  Q+V H+H+H+L  R
Sbjct: 363 AMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRR 399


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
 Frame = +1

Query: 286 EDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGW 465
           E+  C+  NDI P+A  H+LV+ K+ IA+  D    D  LL  +    R L  +      
Sbjct: 27  ENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKKKG 86

Query: 466 R-------LVVNNGKDGAQSVYHLHLHVL 531
                   L +        SV+HLH+H++
Sbjct: 87  EADTVEDMLRIGFHLPPLLSVHHLHMHII 115


>U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical
           protein T07F8.2 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 103 LKFRLKKTYPTNIYDLSRGSAVAVKRPYSDEVRRAHETTTTIGPTIF 243
           L+  +K T  T +  +S    + +++P+  EVRR     T IG +IF
Sbjct: 109 LENSVKITSLTVLSCISIERYITIRKPFCSEVRRQFVNATPIGASIF 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,526
Number of Sequences: 27780
Number of extensions: 356768
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)