Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d04
         (295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   124   8e-30
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    29   0.44 
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    27   1.8  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.1  
AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical ...    27   3.1  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   5.4  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   5.4  
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    25   7.1  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    25   7.1  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    25   7.1  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    25   9.4  
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  124 bits (300), Expect = 8e-30
 Identities = 56/70 (80%), Positives = 65/70 (92%)
 Frame = +2

Query: 53  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 232
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 233 PPGLQVKEVK 262
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 102 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 218
           G+  NR++   T+  S+S+  A  S  P+SS+T  R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
            protein C33E10.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 140  ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK*CN*VNEIKKK 295
            E+ K K   SR    L +  KEK++ LK+++   L +++ K C   NEI +K
Sbjct: 910  ESNKKKSANSRMSLILKLWMKEKSKGLKKNVTNTLTIEDFKRCLFQNEIIRK 961


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 83  FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 193
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AF040645-7|AAB94977.2|  304|Caenorhabditis elegans Hypothetical
           protein F52C6.11 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 44  VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 187
           +++MP  IK  ++FL+ +  K  K  +K+ K  +    K  C   + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 YTLVITDKEKAEKLKQSLPPGLQVKEVK 262
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 179 YTLVITDKEKAEKLKQSLPPGLQVKEVK 262
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 47  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 154
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 47  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 154
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 47  FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 154
           F++   IKD  D+++K   K  KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 YTLVITDKEKAEKLKQSLPP 238
           Y + IT K  AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 295 FFFYFINLVTSLYFFNL 245
           F+F+FI   +S++FF +
Sbjct: 216 FYFFFIRFASSIFFFTI 232


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 47  FNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRC 166
           F MP  I+  ++FLI+   K  K  +K+ K  +    K  C
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVKKYQLKSLKTHC 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,229,390
Number of Sequences: 27780
Number of extensions: 107920
Number of successful extensions: 360
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)