Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d03
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774...   111   7e-25
06_03_0628 - 22909954-22910421                                        110   1e-24
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    30   2.0  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    28   6.1  

>08_02_0425 +
           16975143-16975284,16975682-16975765,16977414-16977496,
           16977610-16977652,16978311-16978378,16978954-16979043,
           16981444-16981620,16982291-16982354,16982452-16982500,
           16983399-16983858
          Length = 419

 Score =  111 bits (266), Expect = 7e-25
 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 74  DWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNK--QHVTTKNTAKLD 247
           DW+ V ++RKK P A+A K E+AVNAARR G  ++T +KY AGTNK     T+ NT +LD
Sbjct: 10  DWEPV-VVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGTSLNTKRLD 68

Query: 248 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAG 397
            +TE L HE++  DL K +MQ R  K M+Q  LA  I EKPQ++ +YE+G
Sbjct: 69  DDTESLAHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESG 118


>06_03_0628 - 22909954-22910421
          Length = 155

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
 Frame = +2

Query: 74  DWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA-KLDR 250
           DW+ V +LR+  PKA+ LK+ +AVN A R G PV+T +K  AGTNK        A KLD 
Sbjct: 13  DWEPV-VLRRTKPKAADLKSTRAVNQAMRTGAPVETVRKAAAGTNKAAAGAAAPARKLDE 71

Query: 251 ETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGK 430
            TE     ++  ++   I + R AKG SQ +LA +I E+ Q+V +YE+G+ +P   VL K
Sbjct: 72  STEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAVPVQAVLAK 131

Query: 431 IERAIGIKLRGK 466
           +ERA+ +KLRGK
Sbjct: 132 MERALEVKLRGK 143


>03_06_0311 +
           33054022-33054118,33056109-33056353,33057058-33057398,
           33057488-33057538,33057623-33057695,33058229-33058333,
           33060124-33060206,33061209-33061249,33061659-33063120,
           33063368-33064847,33064958-33065122,33065232-33065424,
           33065502-33065613,33065702-33065849,33065951-33066148,
           33066234-33066512,33066612-33066773,33066872-33067090,
           33067481-33067612
          Length = 1861

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 302 IMQGRQAKGMSQKDLATKICEKPQIVNDY 388
           +M+ R  +G SQK++  KICE  +I NDY
Sbjct: 677 MMKQRGKRGTSQKNIYIKICE-TEIANDY 704


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 403 ATTSFIIIYNLWFF--TNFSGEVFLTHS 326
           A   F I+  LWF+  T F G VF+TH+
Sbjct: 91  ALIPFSILKLLWFYLQTTFKGRVFMTHA 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,890
Number of Sequences: 37544
Number of extensions: 335625
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)