Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d03
         (692 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridg...   229   6e-62
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    30   0.080
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    27   0.42 
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    25   3.0  

>AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridging
           factor-like proteinprotein.
          Length = 147

 Score =  229 bits (560), Expect = 6e-62
 Identities = 104/136 (76%), Positives = 121/136 (88%)
 Frame = +2

Query: 62  LNMSDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAK 241
           ++ SDWDTVT+LRKK PKA+ LKTE A+N ARRQGIPV+T QK+ AGTNKQHV  KNTAK
Sbjct: 1   MSESDWDTVTVLRKKAPKAATLKTESAINKARRQGIPVETTQKFNAGTNKQHVAAKNTAK 60

Query: 242 LDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIV 421
           LDRET+ELRH+ +   + KLIMQGRQAKG+SQKDLAT+ICEKPQIVNDYEAGRG+PNN++
Sbjct: 61  LDRETDELRHKTLAPSVAKLIMQGRQAKGLSQKDLATQICEKPQIVNDYEAGRGVPNNLI 120

Query: 422 LGKIERAIGIKLRGKE 469
           LGKIER IGIKLRGK+
Sbjct: 121 LGKIERIIGIKLRGKD 136


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 0.080
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 110 PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELRHE-KIPL 286
           P A  L+ +Q      ++   V TQQ+      +QH    N  +  R  E+LR+E + P 
Sbjct: 67  PVAGMLQQQQQQQRQPQRQAVVGTQQQQQRRQQQQHQQRSNATQAQRR-EQLRNEQRRPA 125

Query: 287 DLGKLIMQGRQAKGMSQKDLATKICEKPQI 376
            L +  +    A+G S K L  KI   P++
Sbjct: 126 RLRQDQIIFEPAEGTSYKVLYEKIRLNPRL 155


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 152 ARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLDRETEELR--HEKIPLDLGKLIMQGRQAK 325
           AR + I  +  Q     T +Q  T +       E E++R  HE+    L KL+MQG  A 
Sbjct: 17  ARNERINEELTQMRILMTKQQEYTERRELIAREEMEKMRAAHERDRTALNKLLMQG--AG 74

Query: 326 GMSQKDLATKICEKPQ 373
             S +  AT     PQ
Sbjct: 75  TSSHRAAATPTTPTPQ 90


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 219 TCCLLVPAPYFCCVSTGIPCRRAAFTAC 136
           +CC   P P   C+S  + C+ +    C
Sbjct: 33  SCC--APCPQKACISEAVKCQTSCLPGC 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,937
Number of Sequences: 2352
Number of extensions: 14027
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)