Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2d03
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132156-1|AAD34744.1|  145|Drosophila melanogaster unknown prot...   248   6e-66
AE014296-2756|AAN11755.1|  145|Drosophila melanogaster CG4143-PB...   248   6e-66
AE014296-2755|AAF49449.1|  145|Drosophila melanogaster CG4143-PA...   248   6e-66
AB031273-1|BAA83523.1|  145|Drosophila melanogaster Multiprotein...   248   6e-66

>AF132156-1|AAD34744.1|  145|Drosophila melanogaster unknown
           protein.
          Length = 145

 Score =  248 bits (607), Expect = 6e-66
 Identities = 113/135 (83%), Positives = 126/135 (93%)
 Frame = +2

Query: 68  MSDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 247
           MSDWD+VT+LRKK PK+S LKTE AVN ARRQG+ VDTQQKYGAGTNKQHVTTKNTAKLD
Sbjct: 1   MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQHVTTKNTAKLD 60

Query: 248 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLG 427
           RETEELRH+KIPLD+GKLI QGRQ+KG+SQKDLATKICEK Q+V DYEAGRGIPNN++LG
Sbjct: 61  RETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEKQQVVTDYEAGRGIPNNLILG 120

Query: 428 KIERAIGIKLRGKER 472
           K+ER +GIKLRGKER
Sbjct: 121 KMERVLGIKLRGKER 135


>AE014296-2756|AAN11755.1|  145|Drosophila melanogaster CG4143-PB,
           isoform B protein.
          Length = 145

 Score =  248 bits (607), Expect = 6e-66
 Identities = 113/135 (83%), Positives = 126/135 (93%)
 Frame = +2

Query: 68  MSDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 247
           MSDWD+VT+LRKK PK+S LKTE AVN ARRQG+ VDTQQKYGAGTNKQHVTTKNTAKLD
Sbjct: 1   MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQHVTTKNTAKLD 60

Query: 248 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLG 427
           RETEELRH+KIPLD+GKLI QGRQ+KG+SQKDLATKICEK Q+V DYEAGRGIPNN++LG
Sbjct: 61  RETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEKQQVVTDYEAGRGIPNNLILG 120

Query: 428 KIERAIGIKLRGKER 472
           K+ER +GIKLRGKER
Sbjct: 121 KMERVLGIKLRGKER 135


>AE014296-2755|AAF49449.1|  145|Drosophila melanogaster CG4143-PA,
           isoform A protein.
          Length = 145

 Score =  248 bits (607), Expect = 6e-66
 Identities = 113/135 (83%), Positives = 126/135 (93%)
 Frame = +2

Query: 68  MSDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 247
           MSDWD+VT+LRKK PK+S LKTE AVN ARRQG+ VDTQQKYGAGTNKQHVTTKNTAKLD
Sbjct: 1   MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQHVTTKNTAKLD 60

Query: 248 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLG 427
           RETEELRH+KIPLD+GKLI QGRQ+KG+SQKDLATKICEK Q+V DYEAGRGIPNN++LG
Sbjct: 61  RETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEKQQVVTDYEAGRGIPNNLILG 120

Query: 428 KIERAIGIKLRGKER 472
           K+ER +GIKLRGKER
Sbjct: 121 KMERVLGIKLRGKER 135


>AB031273-1|BAA83523.1|  145|Drosophila melanogaster Multiprotein
           Bridging Factor 1 protein.
          Length = 145

 Score =  248 bits (607), Expect = 6e-66
 Identities = 113/135 (83%), Positives = 126/135 (93%)
 Frame = +2

Query: 68  MSDWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 247
           MSDWD+VT+LRKK PK+S LKTE AVN ARRQG+ VDTQQKYGAGTNKQHVTTKNTAKLD
Sbjct: 1   MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQHVTTKNTAKLD 60

Query: 248 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLG 427
           RETEELRH+KIPLD+GKLI QGRQ+KG+SQKDLATKICEK Q+V DYEAGRGIPNN++LG
Sbjct: 61  RETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEKQQVVTDYEAGRGIPNNLILG 120

Query: 428 KIERAIGIKLRGKER 472
           K+ER +GIKLRGKER
Sbjct: 121 KMERVLGIKLRGKER 135


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,112,009
Number of Sequences: 53049
Number of extensions: 573953
Number of successful extensions: 1372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)