Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c23
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...   176   2e-45
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   5.1  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    26   6.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   6.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.8  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   6.8  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   9.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.0  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score =  176 bits (429), Expect = 2e-45
 Identities = 107/255 (41%), Positives = 147/255 (57%), Gaps = 25/255 (9%)
 Frame = +1

Query: 76  TIKEGQAEICLTT-EKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQK------ 234
           ++ EG A I  +   +VFYNPVQ+FNRDLS+  +  + E    + +A+   + +      
Sbjct: 31  SLTEGSAIIPFSNPNEVFYNPVQQFNRDLSVTAIRAWSETRSKKIVAKSHHRHQLLDQNS 90

Query: 235 --------KLETVQDEESGGNPEPK---------ITILEALSATGLRSIRYAKEIPYATN 363
                   K +T  D E   + +            TILEALSATGLRSIRYAKE+P    
Sbjct: 91  ELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELPNVKR 150

Query: 364 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPS 543
           I+ANDL E AV+TI+ N+ +N VS I+  +  DA  +M+ +K     +  IDLDPYG  +
Sbjct: 151 ILANDLLENAVKTIEKNVNYNNVSDIVIPNKGDANAVMHMNKF---HYDVIDLDPYGSAA 207

Query: 544 IFLDSAVQSIQDGGLLLVTATDMAVLAGNS-PETCYCKYGAVSLKTKCCHEMALRIMLQC 720
            FLD+AVQS+   GLL +T TD AVLAGN+ PE C+  YG  SL++  CHE A+R +L  
Sbjct: 208 PFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRSNFCHEQAVRHLLYA 267

Query: 721 IEQHANRYSRYIVPI 765
           I   A +Y R I P+
Sbjct: 268 IAASAAKYGRAIKPL 282


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 40  IFMRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVL---TLFIEDYKAEKL 210
           ++M +  ++N   +   +  I LT  + F      +N  LSI VL   TLF ED+ AE +
Sbjct: 167 LWMVLNCLTNAAFVLAMRKRIKLTNFRDF--DTMFYNNLLSIPVLVICTLFTEDWSAENI 224

Query: 211 AR 216
           A+
Sbjct: 225 AQ 226


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 364 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHK 489
           ++A + + + +E I   +E ++ + + + +HD+  M MYK K
Sbjct: 99  MVAPNGTVKGIEHIPQLVETSKKNLLKDINHDEVLMEMYKEK 140


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 352 YATNIIANDLSEQAVETIKHNIEHNQVSRI 441
           + T++   D SE   + +  N+E NQ+S I
Sbjct: 95  FVTSLFTGDDSEHFSQDVGQNLEDNQISNI 124


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 115  EKVFYN-PVQEFNRDLSIA-VLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
            +K FY      FN   SI+  L  FI   K EK A+ +++ KK++         NP+  I
Sbjct: 1500 DKQFYEREFTFFNEVTSISGKLKPFIRKSKPEKKAKIDEEMKKIKLDVGVYLPSNPDGVI 1559

Query: 289  TILEALSATGLRS 327
              ++  S   L+S
Sbjct: 1560 VGIDRKSGKPLQS 1572


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +1

Query: 196  KAEKLARFEKKQKKLE-TVQDEESGGNPEPKITILEALSATGLRSIRYAKEIPYATNIIA 372
            K  + AR  ++Q  LE +++   S  +     TIL  L     +    A+E+  ++ I +
Sbjct: 786  KERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPS 845

Query: 373  NDLSEQAVETIKHNIEHNQVSRII 444
            ND S     T +  IE + VS  I
Sbjct: 846  NDSSNVQTPTAESEIEEDGVSEPI 869


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 AIDLDPYGCPSIFLDSAVQSIQ 576
           AID++PYG P +F+   + S++
Sbjct: 6   AIDVEPYGFPPLFIAFQILSMK 27


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 485 INTLQSVLRLLIWTLMDALQYSSTLQYRAF 574
           +N + S L LL W++  A  Y+ +   +AF
Sbjct: 371 LNRMSSALPLLYWSMAHATLYAKSRNLKAF 400


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 644 HVSGELPAKTAISVAVTSSKPP 579
           + SG +PA TA S A    KPP
Sbjct: 202 YASGSVPAATAASTASPVKKPP 223


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 154 DLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEA----LSATGL 321
           D+S  VL  F++++    L +  KK+K    VQD+    + + +I  +E     L+   L
Sbjct: 65  DISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124

Query: 322 RSIRY 336
           R IR+
Sbjct: 125 RGIRF 129


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 364 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKH 492
           +I N LSE++ +T +  +  +  SR I+  HD    +++   H
Sbjct: 241 LIVNKLSEKSNQTAEILVLRDLTSRFIDMIHDICDSVLFSRIH 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,722
Number of Sequences: 5004
Number of extensions: 51702
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)