Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c23
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77136-4|CAB00881.1| 526|Caenorhabditis elegans Hypothetical pr... 233 1e-61
AF059608-1|AAD13737.1| 526|Caenorhabditis elegans N2,N2-dimethy... 233 1e-61
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 29 4.8
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 29 4.8
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 29 4.8
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 28 6.3
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 28 6.3
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 8.4
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 28 8.4
U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical pr... 28 8.4
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 8.4
AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 recepto... 28 8.4
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 8.4
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 8.4
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 8.4
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 8.4
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 8.4
>Z77136-4|CAB00881.1| 526|Caenorhabditis elegans Hypothetical
protein ZC376.5 protein.
Length = 526
Score = 233 bits (569), Expect = 1e-61
Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Frame = +1
Query: 46 MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 225
++ E + I+EGQA++ VFYNPVQEFNRDL++ VL F D+ +K A E+
Sbjct: 13 IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68
Query: 226 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYATNIIANDLSEQAV 396
KQ K E ++ N + KI IL+ALSA+GLR++R++KE+P I+AND S+ AV
Sbjct: 69 KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128
Query: 397 ETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 576
+I+ N++ N V I+E DA M M +H+ KRF A+DLDPYG S FLDSAVQ +
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188
Query: 577 DGGLLLVTATDMAVLAGNSPETCYCKYGAVSLKTKCCHEMALRIMLQCIEQHANRYSRYI 756
D G+L+VT TDMAVL GN+PE CY KY AV+ + KCCHE+ LRI+L+ I+ ANRY+RYI
Sbjct: 189 DRGILMVTCTDMAVLCGNTPEACYNKYDAVTTRMKCCHEVGLRILLRAIDSAANRYTRYI 248
Query: 757 VPI 765
P+
Sbjct: 249 EPL 251
>AF059608-1|AAD13737.1| 526|Caenorhabditis elegans
N2,N2-dimethylguanosine tRNA methyltransferase protein.
Length = 526
Score = 233 bits (569), Expect = 1e-61
Identities = 121/243 (49%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Frame = +1
Query: 46 MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 225
++ E + I+EGQA++ VFYNPVQEFNRDL++ VL F D+ +K A E+
Sbjct: 13 IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68
Query: 226 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYATNIIANDLSEQAV 396
KQ K E ++ N + KI IL+ALSA+GLR++R++KE+P I+AND S+ AV
Sbjct: 69 KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128
Query: 397 ETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 576
+I+ N++ N V I+E DA M M +H+ KRF A+DLDPYG S FLDSAVQ +
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188
Query: 577 DGGLLLVTATDMAVLAGNSPETCYCKYGAVSLKTKCCHEMALRIMLQCIEQHANRYSRYI 756
D G+L+VT TDMAVL GN+PE CY KY AV+ + KCCHE+ LRI+L+ I+ ANRY+RYI
Sbjct: 189 DRGILMVTCTDMAVLCGNTPEACYNKYDAVTTRMKCCHEVGLRILLRAIDSAANRYTRYI 248
Query: 757 VPI 765
P+
Sbjct: 249 EPL 251
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
protein ZK1193.2 protein.
Length = 1250
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +1
Query: 526 PYGCPSIFLDSAVQSIQDGGLLLVTATDMAVLAGNSPETCYCKYGAVSLKTKC 684
P+ CP+ + + I D G L A + G + + C G V K C
Sbjct: 500 PFSCPNFYYQMLITGIDDSGYLYQRIVPAACIGGVNENS--CANGGVYYKGTC 550
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 426 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 334
V+F +M N + ++ E+ SIW FFSI
Sbjct: 150 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 180
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 426 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 334
V+F +M N + ++ E+ SIW FFSI
Sbjct: 142 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 172
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 187 EDYKAEKLARFEKKQKKL 240
E KA KLA+FE+KQKKL
Sbjct: 18 EAEKAAKLAKFEEKQKKL 35
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 61 ISNLKTIKEGQAEICLTTEKVFYNPVQEFNR 153
I+N KT +G+ E C + + Y VQ+F +
Sbjct: 37 INNAKTSLQGEIEFCRNSARDIYGEVQQFKQ 67
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 508 AAIDLDPYGCPSIFLDSAVQSIQDGGLLLVTATDMAVLA--GNSPETCYCKYGAVSLKTK 681
AA P+GCP+ L + V + LV++T+++ G +PE CYC G +
Sbjct: 23 AASPNPPHGCPNFGLCTDVTTT------LVSSTNVSTTYEYGCAPENCYCVDGTTNGTEP 76
Query: 682 C 684
C
Sbjct: 77 C 77
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 27.9 bits (59), Expect = 8.4
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Frame = +1
Query: 22 CFYINNIFMRMETISNLKTIKEG-----QAEICLTTEKVFYNPVQEFNRDLSIAVLTLFI 186
CF + + R E + +K ++ +AEI + T++ P ++ ++ +S
Sbjct: 10 CFDMEDPKPRKEALKKMKKVERSAPAKIEAEIPMETDE---KPAEDGDKPMSKT------ 60
Query: 187 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPK 285
+ K +K A E+K++ + E+ G PEPK
Sbjct: 61 QKRKLKKAAAIERKERAERGEPEPEATGEPEPK 93
>U55371-1|AAL02525.1| 432|Caenorhabditis elegans Hypothetical
protein T19F4.1b protein.
Length = 432
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 187 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEAL 306
E++K KL EK++KKL + E G PE IT E L
Sbjct: 382 EEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415
>AY919615-1|AAY16564.1| 432|Caenorhabditis elegans FLP-2 receptor
protein.
Length = 432
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 187 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEAL 306
E++K KL EK++KKL + E G PE IT E L
Sbjct: 382 EEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 2724 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 2775
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 2724 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 2775
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 130 NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 288
NP E + + AV+ + EKL+ E K+K+ T + G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,625
Number of Sequences: 27780
Number of extensions: 298355
Number of successful extensions: 1028
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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