Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c22
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    31   0.43 
U88184-4|AAK31518.1|   96|Caenorhabditis elegans Hypothetical pr...    27   7.0  
L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte upt...    27   7.0  
AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.      27   7.0  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    27   7.0  

>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -3

Query: 507 LKEINAKIIINTHEMNQHKIYIN-LENIYHVEYKN---ISINYN 388
           LK +N+K++INT  + ++ + IN +++ YH   +N    SIN N
Sbjct: 807 LKTVNSKVLINTEFLQENSLTINVIDSCYHENIQNHVLSSINNN 850


>U88184-4|AAK31518.1|   96|Caenorhabditis elegans Hypothetical
           protein F36H5.9 protein.
          Length = 96

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 516 LSYLKEINAKIIINTHEMNQHKIYINLENIYHV--EYKNISINYN 388
           LS L E N+K +I+  ++   KIYI ++N  HV  +  N S  +N
Sbjct: 29  LSLLSE-NSKKLISALKIFDRKIYIEVQNHVHVILDTHNCSFGFN 72


>L23649-2|AAA27911.2|  433|Caenorhabditis elegans Coelomocyte uptake
           defective protein4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 304 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 185
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>AY611497-1|AAT42012.1|  433|Caenorhabditis elegans CUP-4 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 304 PNKFKEGGAAMFEDNNKNHHNLIEGIKFIIPLLIYKLRLC 185
           PN FKE      E++NK+  +L++ I+ II  ++  L +C
Sbjct: 386 PNTFKEKVQIKKEESNKSWRDLMKLIRPIIGFVLIILLIC 425


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 IISHGLCSSGIFCLANINYERLHSRSLYINRGM 218
           I+ +G  +S ++CL N N + LH   L++ R +
Sbjct: 730 ILKNGKFASLVWCLQNCNSDELHLEVLHVIRNL 762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,811,592
Number of Sequences: 27780
Number of extensions: 117943
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)