Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c17
         (177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   0.43 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   1.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   4.1  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    23   4.1  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    23   7.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    22   9.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    22   9.4  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 160 IIYFVTIHKDKHLDKHVENVTKW 92
           I+Y+  IHK  HLD  + NV++W
Sbjct: 340 ILYY--IHKRPHLDYFLSNVSQW 360


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 64  DMLIFPKNFSYKLLRFTIYIG 2
           DM++F KN  ++ ++ + Y+G
Sbjct: 425 DMVVFSKNVLFRFIQLSFYVG 445


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 63   STN*SCDLYHHFVTFSTCLSKCLS 134
            S N S  L H F T +T LSK L+
Sbjct: 3838 SANHSTSLKHEFGTLNTLLSKYLT 3861


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 74  LICRHANIPKKLFIQTFEVYNLHW 3
           L+C   N+P++L +   E Y +++
Sbjct: 97  LLCSEHNVPRRLHLSISENYRINY 120


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 47  KKLFIQTFEVYNLHW 3
           KKL  +  ++Y LHW
Sbjct: 147 KKLITRVLDMYQLHW 161


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 145 SQSKLYNRKKK 177
           SQSKL NRKKK
Sbjct: 670 SQSKLKNRKKK 680


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 61  CLQISLAICITIL*HFLHVYLNVCLYVSS 147
           CL  +L +    +  F   +L  CLY+SS
Sbjct: 368 CLNSNLLVNFDEVIDFFSGFLKACLYLSS 396


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 83  IARLICRHANIPKKLFIQTFE 21
           I  L+C  AN+PK   +  +E
Sbjct: 728 ICPLLCERANLPKNTPLNIYE 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,540
Number of Sequences: 5004
Number of extensions: 11466
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)