Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c17
         (177 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    31   0.50 

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 28  VCMKSFLGILACLQISLAICITIL*HFLHVYLNVCLYV 141
           VC+   + +  CL +S+ +C++    +L VYL VC+YV
Sbjct: 149 VCLSLRVCVCVCLCVSVYVCVS---SYLCVYLCVCMYV 183



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 28  VCMKSFLGILACLQISLAICITIL*HFLHVYLNVCLYV 141
           VCM   + +  C+ +S+++C+ +   +LH+ + +C+YV
Sbjct: 87  VCMYLCVFLCVCVYVSVSVCLCV---YLHISVYLCVYV 121



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  VCMKSFLGILACLQISLAICITIL*H-----FLHVYLNVCLYVS 144
           VC+   + I  C+ + L +C+++  +     +L V+L VC+YVS
Sbjct: 59  VCVSMCVSISVCVYLCLCVCVSVCVYVSVCMYLCVFLCVCVYVS 102


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,571,854
Number of Sequences: 237096
Number of extensions: 317382
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 76,859,062
effective HSP length: 38
effective length of database: 67,849,414
effective search space used: 1356988280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)