Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c17
         (177 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z81549-7|CAB04471.1|  327|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical
           protein C01A2.5 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 136 KDKHLDKHVENVTKW 92
           K + LDKHV+N TKW
Sbjct: 20  KKEKLDKHVKNATKW 34


>Z81549-7|CAB04471.1|  327|Caenorhabditis elegans Hypothetical
           protein F55C9.8 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 68  CRHANIPKKLFIQTFEVYNLHW 3
           C H NI  K+  Q F ++  HW
Sbjct: 180 CEHLNICYKMSSQAFNLFLKHW 201


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 75  SCDLYHHFVTFSTCLSKCLS 134
           +CD + HF  F+  L++CL+
Sbjct: 135 ACDHFMHFACFNRYLTECLT 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,101,469
Number of Sequences: 27780
Number of extensions: 65014
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)