Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c16
(357 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13238-1|CAA31624.1| 75|Homo sapiens cytochrome c oxidase subu... 71 1e-12
BT007007-1|AAP35653.1| 75|Homo sapiens cytochrome c oxidase su... 71 1e-12
BC000187-1|AAH00187.1| 75|Homo sapiens cytochrome c oxidase su... 71 1e-12
AF067637-1|AAC73061.1| 75|Homo sapiens cytochrome c oxidase su... 71 1e-12
D29808-1|BAA06191.1| 244|Homo sapiens T-cell acute lymphoblasti... 28 9.8
D10653-1|BAA01501.1| 244|Homo sapiens cell surface glycoprotein... 28 9.8
BC113400-1|AAI13401.1| 476|Homo sapiens chromosome 20 open read... 28 9.8
BC113398-1|AAI13399.1| 476|Homo sapiens chromosome 20 open read... 28 9.8
BC018036-1|AAH18036.1| 249|Homo sapiens tetraspanin 7 protein. 28 9.8
AL121756-8|CAI22531.1| 476|Homo sapiens chromosome 20 open read... 28 9.8
AF549189-1|AAP84989.1| 476|Homo sapiens RYA3 protein. 28 9.8
AB102665-1|BAC81134.1| 244|Homo sapiens transmembrane 4 superfa... 28 9.8
AB062057-2|BAB55825.1| 244|Homo sapiens tansmembrane 4 superfam... 28 9.8
AB062057-1|BAB55824.1| 249|Homo sapiens transmembrane 4 superfa... 28 9.8
>X13238-1|CAA31624.1| 75|Homo sapiens cytochrome c oxidase subunit
VIc preprotein protein.
Length = 75
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +3
Query: 66 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 242
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 243 KKGLFQS 263
K G+FQS
Sbjct: 67 KAGIFQS 73
>BT007007-1|AAP35653.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +3
Query: 66 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 242
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 243 KKGLFQS 263
K G+FQS
Sbjct: 67 KAGIFQS 73
>BC000187-1|AAH00187.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +3
Query: 66 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 242
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 243 KKGLFQS 263
K G+FQS
Sbjct: 67 KAGIFQS 73
>AF067637-1|AAC73061.1| 75|Homo sapiens cytochrome c oxidase
subunit VIc protein.
Length = 75
Score = 70.9 bits (166), Expect = 1e-12
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +3
Query: 66 KPQMRGLLNAVIKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMR 242
KP+MRGLL ++ ++ VA LS GVA +K + ++RK+ YA+FYR YD K+FEEMR
Sbjct: 8 KPRMRGLLARRLRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMR 66
Query: 243 KKGLFQS 263
K G+FQS
Sbjct: 67 KAGIFQS 73
>D29808-1|BAA06191.1| 244|Homo sapiens T-cell acute lymphoblastic
leukemia associated antigen 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 85 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDE 131
>D10653-1|BAA01501.1| 244|Homo sapiens cell surface glycoprotein
protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 85 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDE 131
>BC113400-1|AAI13401.1| 476|Homo sapiens chromosome 20 open reading
frame 185 protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 212 IGSVEFSILSLALITNELLE 153
+GSVEFS+ +L LI+N+ +E
Sbjct: 225 LGSVEFSLATLPLISNQYIE 244
>BC113398-1|AAI13399.1| 476|Homo sapiens chromosome 20 open reading
frame 185 protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 212 IGSVEFSILSLALITNELLE 153
+GSVEFS+ +L LI+N+ +E
Sbjct: 225 LGSVEFSLATLPLISNQYIE 244
>BC018036-1|AAH18036.1| 249|Homo sapiens tetraspanin 7 protein.
Length = 249
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 90 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDTMQTYNGNDE 136
>AL121756-8|CAI22531.1| 476|Homo sapiens chromosome 20 open reading
frame 185 protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 212 IGSVEFSILSLALITNELLE 153
+GSVEFS+ +L LI+N+ +E
Sbjct: 225 LGSVEFSLATLPLISNQYIE 244
>AF549189-1|AAP84989.1| 476|Homo sapiens RYA3 protein.
Length = 476
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -2
Query: 212 IGSVEFSILSLALITNELLE 153
+GSVEFS+ +L LI+N+ +E
Sbjct: 225 LGSVEFSLATLPLISNQYIE 244
>AB102665-1|BAC81134.1| 244|Homo sapiens transmembrane 4
superfamily member 2 protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 85 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDE 131
>AB062057-2|BAB55825.1| 244|Homo sapiens tansmembrane 4 superfamily
2b protein.
Length = 244
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 85 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDE 131
>AB062057-1|BAB55824.1| 249|Homo sapiens transmembrane 4
superfamily member 2 protein.
Length = 249
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 87 LNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKE 227
L A+ + +A ++G++GF F+ I + R Y + +TY+ E
Sbjct: 90 LYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQTYNGNDE 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,426,796
Number of Sequences: 237096
Number of extensions: 658202
Number of successful extensions: 1686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -