Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c15
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.59
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 29 0.78
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 29 1.0
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 3.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 7.3
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 7.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 7.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 9.6
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 25 9.6
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.59
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 205 KPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKEFKCLLFYDMANRLCLATNTSQIT 384
KPV +E ++ E+ N+ I D P ++ + + + L N SQ +
Sbjct: 352 KPVPVQTEETTETLEDLIKNRIISKTFDDVP---KRAPVAVTEFRPSELFELNENKSQRS 408
Query: 385 LKEDYVAEINKEQTLDNVCSEA 450
L E+Y E K+ D SEA
Sbjct: 409 LAEEYEEEFLKKSNADTYKSEA 430
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 29.1 bits (62), Expect = 0.78
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 349 RLCLATNTSQITLKEDYVAEI--NKEQTLDNVCSEAKNWVLSKFTDYKLYSSKILQVGCS 522
R+ L + I K + E+ + ++ L + S + L F + ++ + L + C
Sbjct: 527 RVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCL 586
Query: 523 DVCGVDVWTNLDVNFY 570
D+CG + TNL V+ Y
Sbjct: 587 DICGPVICTNLFVSDY 602
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 211 VSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKE 315
V +LLK + +C + FL +KS C KE
Sbjct: 98 VQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKE 132
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = -2
Query: 369 ISGQAQAVGHIIKQQTFKFFPRVLRTLIYGRLNLLIQKLIFTTI*KFFQQCRNWL 205
I G + +V H I ++ + F + + +++ G ++ + I T +FF QC++ L
Sbjct: 99 IKGSSSSVSHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGL 153
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +1
Query: 493 SSKILQVGCSDVCGVDVWTNLDVNFYCKFYKWGDELLKTQPHVVANSGHESIIKTISEPK 672
S + LQ + CG W D + C + D+L K + + E + K + +
Sbjct: 2191 SREYLQKWYEEWCGKQDWDESDKSVVCWIEEHNDDLSKRTQELKSTYYSERLSKLLRSDR 2250
Query: 673 QN--DSL-DIIVSAGTNEK 720
+ DSL ++ NEK
Sbjct: 2251 KGMIDSLAQVLTELDENEK 2269
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 164 IKRIVSTYRNILFYLAQTLVSESLKPELSVFLFKIACTSIFVKKTSI 24
+K +STY+++LF + TL+ S SV F + K+ SI
Sbjct: 326 LKLTMSTYQDVLFQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSI 372
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 572 VNFTNGVTNY*KLNHMLWPIQAMRA*LRPYLSQNKM---THLISLSVQELMKNLKTKLFS 742
+ FTN + N K N + ++ ++ +R +S NK+ H I + + L L T
Sbjct: 731 IRFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLDLRQHYIPILYESLPVKLST---G 787
Query: 743 HQKVHPVQLMLVQNYH 790
H V P + L+ Y+
Sbjct: 788 HSDVVPEIIELMDEYY 803
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 595 ELLKTQPHVVANSGHESIIKTISEPKQND-SLDIIVSAGTNEKPKDKAIQSPEGSSSPIN 771
EL + S H + KT S Q ++++ A + E+ + +S P
Sbjct: 423 ELESDEESTAETSKHVTSKKTSSRGGQTQQAVEVHTDANSPEENNTPVTKKEVETSKPPA 482
Query: 772 ASSKLPPVNE 801
S PPVNE
Sbjct: 483 VSGSTPPVNE 492
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 721 PKDKAIQSPEGSSSPINASSKLPP 792
P K +Q G ++P+NA +PP
Sbjct: 176 PSGKVVQVMYGHTAPVNAGKFIPP 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,270
Number of Sequences: 5004
Number of extensions: 68074
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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