Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c15
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0443 - 17808897-17809110,17809169-17813652 34 0.12
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 31 0.82
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 31 1.1
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 31 1.4
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 30 1.9
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124 28 7.6
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 28 7.6
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 598 LLKTQPHVVANSGHESIIKTISEPKQNDSLDIIVSAGTNEKPKDKAIQSPEGSSSPINAS 777
L+ QPH+ +N G+ IK +P ++ IV KP IQ GSS P+ +
Sbjct: 23 LISRQPHIFSN-GYR--IKFNEDPSSECNIGYIVPEWVESKPSLSDIQELHGSSKPLPTT 79
Query: 778 SKLPPVNEQE 807
+ + P+ ++
Sbjct: 80 TIILPLKSEK 89
>12_02_0318 -
17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 31.5 bits (68), Expect = 0.82
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 598 LLKTQPHVVANSGHESIIKTISEPKQNDSLDIIVSAGTNEKPKDKAIQSPEGSSSPINAS 777
L+ +QPH+ +N G++ IK EP ++ + IV +EKP I + G S + +
Sbjct: 157 LVSSQPHIFSN-GYQ--IKFNEEPSEDCDIGYIVPKWVDEKPSIDDIHAVYGYSKKLPTT 213
Query: 778 SKLPPVNEQE 807
+ + P+ +
Sbjct: 214 TIILPLKSDK 223
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 304 PRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNV-CSEAKNWVLSKFTD 480
P E C+L + N + +TS D + I D+V CS+ K W+L + TD
Sbjct: 499 PVLEVLCVLL--LQNAGLKSKDTSARCFAIDLLGGIASRLKRDSVICSKEKLWILQELTD 556
Query: 481 YKLYSSKILQVGC 519
+ SKIL+ C
Sbjct: 557 TESDGSKILKNKC 569
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 19 ERIDVFLTKIEVHAILNKNTESSGFKDSLTKVCAK*NKMFRYVLTIL--LINSCYRSLGV 192
E++ F KIE + N + E F+ ++KV + KM + L+ L IN+ YR L
Sbjct: 742 EKLFQFARKIE-ELMYNMSPEEIPFQVGMSKVDFR--KMLKSSLSGLDKTINAMYRKLQK 798
Query: 193 PSTPKPVSALLKELSDRCENQFLNK 267
T + LL L D+C+ +FL+K
Sbjct: 799 NITAEE---LLPSLWDKCKKEFLDK 820
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = +1
Query: 298 QDPRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNVCSEAKNWVLSKFT 477
+ P K+ + + + + + +A +S + ED +A++ +T+DN+CS+ +W S+F
Sbjct: 671 ESPLKDNRATASWQVPSSV-IALVSSILRKGEDDLAQLYALRTIDNICSQGTDWT-SRFA 728
Query: 478 DYKLYS 495
+ S
Sbjct: 729 SQDVIS 734
>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
Length = 904
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 223 LKELSDRCENQFLNKQIKSAIDQCPQD 303
+K LSD + L+++I S DQCP D
Sbjct: 328 IKHLSDVDSRRLLHRRILSGEDQCPDD 354
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 571 CKFYKWGDELLKTQPHVVANSGHESIIKTIS 663
C+FY+ D LLK + + N +S +K I+
Sbjct: 419 CRFYEISDNLLKLETQIALNGKKKSSLKRIT 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,325,772
Number of Sequences: 37544
Number of extensions: 377719
Number of successful extensions: 1086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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