Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c14
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical pr... 47 2e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 30 2.0
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 29 2.7
U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical p... 29 3.5
Z71261-4|CAA95804.1| 126|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical ... 28 6.2
AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protei... 28 6.2
U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z73103-1|CAA97424.1| 117|Caenorhabditis elegans Hypothetical
protein C08F8.1 protein.
Length = 117
Score = 46.8 bits (106), Expect = 2e-05
Identities = 32/115 (27%), Positives = 54/115 (46%)
Frame = +2
Query: 137 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMA 316
D E+ +AF DLQ ET+ I + V + + T++ + L K Y S+
Sbjct: 3 DEEISKAFRDLQFKTNETRMRIVQGEQNKKVNYQKMRISESTKKNLVDLDENLKYYRSVG 62
Query: 317 RMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKR 481
RMF+ +D + +I+ + +K L L E+E+N+R+LIQ +R
Sbjct: 63 RMFLLTDKPAEISRHEAEAKQSKEKIEAIEKQKDYLEKGLVEAETNLRELIQSRR 117
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 278 VLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVC--LNHTLNESES 451
VL P YE A + VQSD +L + LI + +L ++ + NH+ N
Sbjct: 206 VLDPAI-AYEISATVTVQSD-----PDLEIDYDNLIQSLKELQDQAIVRPANHSSNRLSE 259
Query: 452 NIRDLIQQKRMKNENQPAAES 514
R L+ ++R + N P +S
Sbjct: 260 ETRKLLNKRRFMDRNDPQFKS 280
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 332 SDLEHIKQNLRQKTNTLISRIDDLNNR------KVCLNHTLNESESNIRDLIQQKRMKN 490
+D+E +K+ LRQK L DDL N+ K+ L E +RDL + KN
Sbjct: 12 ADVERLKKILRQKDEMLEEMEDDLKNQGKPCSSKLSLEERAQELSEQLRDLHVEMDGKN 70
>U42841-14|AAC48172.3| 469|Caenorhabditis elegans Hypothetical
protein T17H7.7 protein.
Length = 469
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 137 DLELKQAFVDLQVLMIETKKTIENIDHQLAVLGRMQMHTNLTQREIDVL---PPGTKTYE 307
DLE+ Q F L + ETK +E ++ + +M T+ T E+ + P T T
Sbjct: 188 DLEVVQLFKKLNLSKEETKSIVERVEQVVREKLMSKMDTSSTTTEVTTVVTTPSTTTTTT 247
Query: 308 SMARMFVQSDLEHIKQNLRQK 370
S + + E I++ + ++
Sbjct: 248 STTQAPTTTTKEFIEEEIEEE 268
>Z71261-4|CAA95804.1| 126|Caenorhabditis elegans Hypothetical
protein F21C3.5 protein.
Length = 126
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Frame = +2
Query: 194 KTIENIDHQLAVLGRMQMHTNLTQR-----EIDVLPPGTKTYESMARMFVQSDLEHIKQN 358
+T+E D + R +M LT+ E+D++ +K Y+ + + V+ DLE +
Sbjct: 15 RTLEK-DREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARST 73
Query: 359 LRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPAAES 514
+ ++ + S + ++ E + ++ QK + Q AA++
Sbjct: 74 VEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNM--QKSFQMMAQAAAQA 123
>AL033514-2|CAA22093.2| 233|Caenorhabditis elegans Hypothetical
protein Y75B8A.2a protein.
Length = 233
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 459 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 376
LMLD KVWF+ +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227
>AF172091-1|AAD48875.1| 233|Caenorhabditis elegans NOB-1B protein
protein.
Length = 233
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 459 LMLDSLSFKVWFKHTFRLFKS-SMRLINV 376
LMLD KVWF+ +R + + S+ +INV
Sbjct: 199 LMLDEKQVKVWFQVCYRQYSAESLEIINV 227
>U97017-6|AAB52362.1| 374|Caenorhabditis elegans Hypothetical
protein F47B3.7 protein.
Length = 374
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 374 NTLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQP 502
NT SR ++ + ++HTLN+ S +RD + KN N P
Sbjct: 41 NTAQSRRMHVSIVRPWVHHTLNKGVSKLRDEFSEVANKNPNVP 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,313,075
Number of Sequences: 27780
Number of extensions: 292328
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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