Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c11
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    31   0.14 
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    31   0.19 
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   2.4  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   4.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   4.1  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 473  VSIIALCLYYFGVSFNATLPWTQCLPEWRNCVPSGQSANLTEIQ 604
            + +I+  L   GV F  T+   QC+ EW+   P+  S  L ++Q
Sbjct: 1518 IKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQ 1561


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -2

Query: 520 VKAHSEVVKAKGDD*YVV----RKHVDGPQGLCVSSTGHSRRQCPDLDAVPAAKL 368
           V A   VV AKG+  Y+     RK++D   G+ V+S GH+  +   L A   +KL
Sbjct: 50  VYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKL 104


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 362 LGQFSSGNCVKIWALSPAMTGTG-YAQTLGAVYVLSYYV 475
           LG+   G+ V IW + P     G +AQ LGA  V+   V
Sbjct: 216 LGEVKKGDTVAIWGMGPIGLYAGRWAQILGASKVIGIEV 254


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 89  RVNAGFDPSPENVNDL--KAIDNEDGKKRNVAERPTWDNQ 202
           R NA    + +N  D+  K  +NED    N AE+P+ + Q
Sbjct: 59  RQNADLSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQ 98


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 110 PSPENVNDLKAIDNEDGKKRNVAERPTWD 196
           P P  V+D +A D +DGK     +R T D
Sbjct: 850 PIPNEVDDAEAADEKDGKLVEEEQRVTGD 878


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 107 DPSPENVNDLKAIDNEDGKKRN 172
           DP PENVND    +NED + R+
Sbjct: 49  DPCPENVND----ENEDEQNRS 66


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 180 SATFLFFPSSLSIAFKSLTFSGDGSNPAFTRSPFSFIPFESIRCD*RVSSMTASTFA 10
           S +    PSS S+   S++ S   S+   T S FS +   +      VSS ++STF+
Sbjct: 143 SVSSAILPSSTSVEV-SISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFS 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,573
Number of Sequences: 5004
Number of extensions: 83379
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)