Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c11
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972...    34   0.15 
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058...    30   1.9  
08_02_0184 + 13947739-13947930,13948289-13948465,13948546-139486...    29   4.3  
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815...    29   4.3  
07_03_0837 + 21870106-21870509,21870601-21870778                       28   7.6  

>01_07_0074 -
           40894916-40895754,40896322-40896691,40897239-40897291,
           40897456-40897593,40897646-40897716,40898655-40898900,
           40899205-40899386,40899494-40899697
          Length = 700

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +2

Query: 497 YYFGVSFNATLPWTQCLPEWRNCVPSGQSANLTEIQGEAVSSAQLYFTETVLRQSDRIDD 676
           + FG ++       Q    W+  +   QS  +  + G+  +S    F   VL  +D  D 
Sbjct: 54  FSFGQAYKTRHRQPQVFTVWQTLMLGYQSLGI--VYGDLGTSPLYVFPSVVLPDADATDF 111

Query: 677 -GI-GIPIWDLTLCLLVSWLIIFVIVARGVK 763
            GI  + IW LTL  LV W I  V  A   +
Sbjct: 112 LGILSLIIWTLTLMSLVKWYICTVFAAASAR 142


>06_03_1194 +
           28305388-28305472,28305603-28305682,28305771-28305839,
           28305936-28305993,28306082-28306134,28306229-28306271,
           28306360-28306421,28306914-28307027,28307183-28307285,
           28307377-28307426,28308138-28308266,28308340-28308591,
           28308684-28308763,28309040-28309166,28309247-28309390,
           28309849-28310034
          Length = 544

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 457 VDGPQGLCVSSTGHSRRQCPDLDAVPAAKLP 365
           +DG   L V S  H++R  PD+D  P A+ P
Sbjct: 107 MDGLDALLVKSKHHAKRVDPDIDGFPQAQSP 137


>08_02_0184 +
           13947739-13947930,13948289-13948465,13948546-13948665,
           13948709-13948753,13948848-13949012,13949324-13949402,
           13949552-13949631,13950548-13950616,13950948-13951031
          Length = 336

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 134 LKAIDNEDGKKRNVAERPTWDNQIE 208
           LK I+ E G  RN+ E+  WD ++E
Sbjct: 37  LKEIEEELGAPRNILEKIIWDKEVE 61


>07_03_1445 +
           26580293-26580610,26580814-26581314,26581411-26581508,
           26581900-26581978,26582065-26582325,26582409-26582576,
           26582800-26583237
          Length = 620

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +2

Query: 185 PTWDNQIEFLMSCIATSVGLGNVWRFPFV 271
           P W+N   F MSCI   V  GN  RFP V
Sbjct: 432 PFWENVYGFDMSCIGKEV-TGNSARFPVV 459


>07_03_0837 + 21870106-21870509,21870601-21870778
          Length = 193

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 238 WSRKRMAVSFRRLPKRRWSL 297
           W R    V +RR+ +RRWSL
Sbjct: 68  WERPTAVVDWRRIARRRWSL 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,608,740
Number of Sequences: 37544
Number of extensions: 581627
Number of successful extensions: 1520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)