Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c11
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...   147   9e-38
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...   147   1e-37
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...   119   4e-29
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.82 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.4  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   7.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score =  147 bits (357), Expect = 9e-38
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 18/230 (7%)
 Frame = +2

Query: 167 RNVAERPTWDNQIEFLMSCIATSVGLGNVWRFPFVAYQNGGGAFLIPYIIVLLVIGKPMY 346
           + + +R  W ++IEF++S +  ++GLGN+WRFP++ Y+NGGGAF++PY I L + G PM+
Sbjct: 14  KTLPDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMF 73

Query: 347 FLETVLGQFSSGNCVKIWALSPAMTGTGYAQTLGAVYVLSYYVSIIALCLYYFGVSFNAT 526
            +E  LGQ  +   + ++ ++P   G GYA  + + +   YY+ I+A  L+Y  VS    
Sbjct: 74  LMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRID 133

Query: 527 LPWTQCLPEW--RNCV-PSGQSANLTEIQGEAV---------SSAQL------YFTETVL 652
           LPW  C   W  R C+ P+ +   L   Q E V         S A L      ++    L
Sbjct: 134 LPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTL 193

Query: 653 RQSDRIDDGIGIPIWDLTLCLLVSWLIIFVIVARGVKSSGKAAYFLALFP 802
           + SD I++ IG   W+L   L V W++ +  + +GVK +GK  YF +LFP
Sbjct: 194 QISDGIEN-IGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFP 242


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score =  147 bits (356), Expect = 1e-37
 Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 18/230 (7%)
 Frame = +2

Query: 167 RNVAERPTWDNQIEFLMSCIATSVGLGNVWRFPFVAYQNGGGAFLIPYIIVLLVIGKPMY 346
           + + +R  W ++IEF++S +  ++GLGN+WRFP++ Y+NGGGAF++PY I L + G PM+
Sbjct: 67  KTLPDRGMWSSKIEFILSVVGLAIGLGNLWRFPYLCYKNGGGAFMVPYFIALALAGVPMF 126

Query: 347 FLETVLGQFSSGNCVKIWALSPAMTGTGYAQTLGAVYVLSYYVSIIALCLYYFGVSFNAT 526
            +E  LGQ  +   + ++ ++P   G GYA  + + +   YY+ I+A  L+Y  VS    
Sbjct: 127 LMELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSLRID 186

Query: 527 LPWTQCLPEW--RNCV-PSGQSANLTEIQGEAV---------SSAQL------YFTETVL 652
           LPW  C   W  R C+ P+ +   L   Q E +         S A L      ++    L
Sbjct: 187 LPWRTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHALLKDPVKEFWERRTL 246

Query: 653 RQSDRIDDGIGIPIWDLTLCLLVSWLIIFVIVARGVKSSGKAAYFLALFP 802
           + SD I++ IG   W+L   L V W++ +  + +GVK +GK  YF +LFP
Sbjct: 247 QISDGIEN-IGSIRWELAGTLAVVWIMCYFCIWKGVKWTGKVVYFTSLFP 295


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score =  119 bits (286), Expect = 4e-29
 Identities = 67/200 (33%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
 Frame = +2

Query: 242 LGNVWRFPFVAYQNGGGAFLIPYIIVLLVIGKPMYFLETVLGQFSSGNCVKIWALSPAMT 421
           L NVWRFP++ Y+NGGGAFLIPY + L++ G PM+F+E  LGQ  +   + ++ ++P   
Sbjct: 1   LANVWRFPYLCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFK 60

Query: 422 GTGYAQTLGAVYVLSYYVSIIALCLYYFGVSFNATLPWTQCLPEW--RNCV-PSGQSA-- 586
           G GYA  + + ++  YY+ I+A  ++YF +S  + LPW  C   W  +NCV P  + +  
Sbjct: 61  GIGYAAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLS 120

Query: 587 ---NLTE----IQGEAVSSAQLYFTETV-------LRQSDRIDDG---IGIPIWDLTLCL 715
               +T+    I+  +V+   +  TE          R++ +I +G   +G   W+L   L
Sbjct: 121 CWLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFWERRALQISEGVEYVGNIRWELAGTL 180

Query: 716 LVSWLIIFVIVARGVKSSGK 775
           L+ W++ +  + +GVK++GK
Sbjct: 181 LLVWILCYFCIWKGVKTTGK 200


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 431 YAQTLGAVYVLSYYVSIIALCLYYFGVSFNATL 529
           YAQ       L+ ++ I++ CLYYF  + N  L
Sbjct: 295 YAQESDYYPDLNEWLYILSGCLYYFSTTINPIL 327


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
 Frame = +2

Query: 308 YIIVLLVIGKPMYFLETVLGQFSSGNCVKIWALSPAMTGTGYAQTLGAVYVLSYYVSIIA 487
           YI++ + +   + F+  ++G  S+  CV I       T T Y     AV  L   +S + 
Sbjct: 51  YIVLPITVIYAVIFVTGLVGNVST--CVVIARNKSMHTATNYYLFSLAVSDLLLLISGLP 108

Query: 488 LCLYYFGVSFNATLPWTQCLPEWRNCVPSGQSANLTEIQGEA---VSSAQLYFTETVLRQ 658
             +YY    F        C+ +      S  +  LT         ++    + + T+ + 
Sbjct: 109 PEIYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVERYIAICHPFISHTMSKL 168

Query: 659 SDRIDDGIGIPIWDLTLCLLVSWLIIFVIV 748
           S  +     I IW L LCL V   I F +V
Sbjct: 169 SRAVK--FIIVIWLLALCLAVPQAIQFGVV 196


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 579 CPEGTQFLHSGRHCVQGKVALKLTP 505
           CP+G + L  G  CV+ KV+  + P
Sbjct: 64  CPDGLKLLSDGLMCVE-KVSTTIVP 87


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 208 LDLIVPCWALSHVSFLPIFV 149
           ++LIVPC ++S++S L  ++
Sbjct: 240 VNLIVPCVSISYLSVLAFYL 259


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
 Frame = +2

Query: 461 LSYYVSIIALCLYYFGVSFNATL------PWTQCLPEWRNCVPSGQSANLTEIQGEAVSS 622
           ++ +V  +  CLYYF  + N  L       +     E   C PS  S   T +     SS
Sbjct: 293 INQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPSITRTGLSSVRDSS 352


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 796 ESEKISSLARTLHTSGHDDKNYKPRYQQTQSEIPYRNSD 680
           ES+K ++ + +L +  HD ++   RY + +S    RN +
Sbjct: 206 ESKKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNRE 244


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYK 728
           +E + ISSL+   + S +++ NYK
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYK 100


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 579 CPEGTQFLHSGRHCVQ 532
           CP+G + L  G  CV+
Sbjct: 64  CPDGLKLLSDGLMCVE 79


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 799 EESEKISSLARTLHTSGHDDKNYKPRYQQTQSEIPYRN 686
           +E + ISSL+   +   +++ NYK  Y     ++ Y+N
Sbjct: 310 KERKIISSLSNNYN---YNNNNYKYNYNNYNKKLYYKN 344


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +2

Query: 680 IGIPIWDLTLCLLVSWLIIFVIVARGVKSSGKAA 781
           +G+P  D++L   V W++  +  +  V   G  A
Sbjct: 456 LGLPTNDISLLFAVDWMLDRIRTSINVLGDGYGA 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,008
Number of Sequences: 438
Number of extensions: 6294
Number of successful extensions: 31
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)