Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c10
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   3.7  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   6.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   8.5  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 210 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 326
           +  +  +LT+ PN    L+T+H    S Y Y LK+    DS+N
Sbjct: 33  FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 417 HLHSIEDLGGKKHAVRL-LEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQN 572
           HL  +E +      V+L L+Y    L K    ++ LL Q  E ++NL +KLQN
Sbjct: 272 HLSRLEKIRELLTFVQLELKYYVEPLKKELQETKTLLAQKEEEISNLKDKLQN 324


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 362
           T+   +++ L+T  S   YVLK + +   +NV  V  Q E +N
Sbjct: 50  TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 92  EATTGAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 217
           +A+  A   YP+   P    A  R +LRD  A P+    LR+
Sbjct: 530 KASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 559 TNCRTSTTPVW 591
           TNC+T TTP+W
Sbjct: 636 TNCQTRTTPLW 646


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 135 DHEQVKLLAER--LYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMN 308
           D+EQV  L +   L G +++   +  GY +   +  EDP+ +  L          L++  
Sbjct: 614 DYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELAR 673

Query: 309 SIDSQNV 329
           +ID   V
Sbjct: 674 TIDRPEV 680


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 411 FGHLHSIEDLGGKKHAVRLLEYVPGE 488
           +G LH I++LGG +  + L+E V  +
Sbjct: 71  YGLLHDIKELGGTEEDLELIEDVESD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,482
Number of Sequences: 5004
Number of extensions: 57683
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)