Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c10
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818... 30 1.7
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 29 3.8
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 29 3.8
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 5.1
02_04_0036 + 19097693-19098106 29 5.1
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 28 6.7
12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258... 28 8.8
07_03_0524 - 19037638-19038294 28 8.8
03_06_0391 - 33577872-33578093,33578556-33579218 28 8.8
>04_04_0333 -
24481029-24481109,24481185-24481253,24481785-24481853,
24481923-24481944,24482302-24482393,24482688-24482803,
24482899-24483042,24483287-24483476
Length = 260
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 108 PGQVIRPIIDHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 281
PG + +++ VK+ RL +SVLD L+ YD + K E + +PL N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170
Query: 282 YG 287
G
Sbjct: 171 DG 172
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +3
Query: 174 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 347
G+ L+ T NG +K Y +P + P++T S + I++S S +E Q
Sbjct: 92 GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149
Query: 348 ---NEIMNFLATRSVTCPKPVRNI 410
N +++ T ++ P V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 381 VTCPKPVRNIFGHLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFV-ANLD 557
+ C KP RNI+G L ++ DL G++ AV L +L+ C L + +G V D
Sbjct: 280 IKCEKPNRNIYGFLATV-DLDGRR-AVSL--GTSNIMLRGCELKNT-AWAIGVAVYTGRD 334
Query: 558 NKLQNFNHSGLVSRQ 602
K+ N+SG S++
Sbjct: 335 TKVM-LNNSGAPSKR 348
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 380 RDLSQASTEYIRSSTLHRGPGRQETRRKTAGVCTGR 487
R Q + R +HRG GR RR++ G TGR
Sbjct: 18 RTALQCRERWWRRRPVHRGRGRGGRRRRSGGDATGR 53
>02_04_0036 + 19097693-19098106
Length = 137
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 393 KPVRNIFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLG 536
+PV +F H HS+ GG++ A RL+ + G + +A QLG
Sbjct: 68 RPVEGLFRYCHRHSVSAAGGERRAFRLVRFA-GAASEEIRRGDATFQQLG 116
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 496 RTVPCPKLSCISSENLSLIWITNCRTSTT 582
R V C +L C + +++ +W+ +CR S T
Sbjct: 620 RIVLCVRLLCNTGDDVRKVWLQSCRQSFT 648
>12_01_0335 -
2583476-2583493,2583919-2583965,2584151-2584274,
2584421-2584665,2585281-2585404,2585424-2585456
Length = 196
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 431 RGPGRQETRRKTAGVCTGRALEELSLVR 514
R + + RR+ +G TGR LE L+LVR
Sbjct: 58 RNGKKNQQRRRISGDATGRFLEALALVR 85
>07_03_0524 - 19037638-19038294
Length = 218
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 504 DSSSRALPVHTPAVLRRVSCLPGPRWSVDDRIYSVLAWDRSRSEW 370
D++ R P H A RR S LPG + + A +R R+ W
Sbjct: 172 DAAVRRAPGHDHARSRRTSVLPGRPTVAGKSLRLLTAEERKRASW 216
>03_06_0391 - 33577872-33578093,33578556-33579218
Length = 294
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Frame = -3
Query: 168 DARPVASPARGRLSD------G*PAPAPVVASRQ 85
D+ P+A+PAR R S P+PAP V +RQ
Sbjct: 137 DSHPIATPARSRASQLEVVPAAGPSPAPPVEARQ 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,407
Number of Sequences: 37544
Number of extensions: 394122
Number of successful extensions: 1390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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