Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c10
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 30 2.0
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 30 2.0
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 30 2.0
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 29 3.4
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 28 6.0
U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein. 28 6.0
U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan hyd... 28 7.9
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 28 7.9
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 28 7.9
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 110 GAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQE 223
G+G P +RP G+ G R R G ER RR++
Sbjct: 609 GSGMPGIDRPPGGDRMGDKQRRGARGGVKERERKRRRD 646
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 444 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 581
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 275 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 321
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 444 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 581
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 275 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 321
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 444 GKKHAVRLLEY-VPGELLKNCPLSEALLYQLGEFVANLDNKLQNFNH 581
G K+ + +Y + G ++ CP + ++ G V N D + QN NH
Sbjct: 326 GPKNCIACSKYELDGICIETCPSRKIFNHKTGRLVFNPDGRYQNGNH 372
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 140 RAGEATGRASLRDIRAGPDRAER 208
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 140 RAGEATGRASLRDIRAGPDRAER 208
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 459 VRLLEYVPGELLKNCPLSEALLYQLGEF 542
VR L+ PG +LK PL+EA +GEF
Sbjct: 134 VRCLQENPGRVLKCAPLTEAFEKCVGEF 161
>U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical
protein R151.9 protein.
Length = 152
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 495 KNCPLSEALLYQLGEFVANLDNKLQNFNHS 584
K PLSE L QLGE N + +L F S
Sbjct: 6 KGVPLSELSLQQLGELQKNCEQELNFFQES 35
>AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein.
Length = 152
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 495 KNCPLSEALLYQLGEFVANLDNKLQNFNHS 584
K PLSE L QLGE N + +L F S
Sbjct: 6 KGVPLSELSLQQLGELQKNCEQELNFFQES 35
>U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform b protein.
Length = 429
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 246 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 371
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 382 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 422
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 246 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 371
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 246 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 371
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,614
Number of Sequences: 27780
Number of extensions: 324121
Number of successful extensions: 1086
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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