Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2c09
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   2.9  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.0  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   6.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   6.6  

>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 558 LTETKNKL*DILKYVNEIYYTYDNKKSSSTSYNDS 662
           LTE  +K    LK   ++Y+ YDN  SS T + ++
Sbjct: 150 LTEEMSKTLRALKEEKKMYFNYDNFLSSQTVHEEN 184


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  VCFEDVKSFPPVVNGKINLVSFLEAATDLVY 102
           V FED K  PP+V G  + V F     DL++
Sbjct: 293 VLFEDGKWSPPIVPGLHSRVEFTIPVNDLIH 323


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 478 QCDIETRQFCLETFDITINSKRFDHLCKSW 389
           Q +    Q+ L T DIT+N+++   + K W
Sbjct: 856 QIEPTNSQYFLRTLDITLNNEKLKSVAKFW 885


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 244 SICRYTRKFTGKKGDKYEICIHQS 315
           S  R T+K TG++ DKY + I Q+
Sbjct: 166 SYMRQTKKMTGRELDKYNLKIRQA 189


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   DTIVCFED-VKSFPPVVNGKINLVSFLEAATDL 96
           D  + F+D V+ + P   GK+++ +FLE   D+
Sbjct: 2   DEYIPFDDIVRQYDPDYTGKVSIQAFLEIVDDV 34


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 305 FTKAYEGSVKKYHSWVTQQLFIFICK 382
           F  AY G V     W T +L  F+CK
Sbjct: 101 FNPAYLGIVNSGTQWSTDELRYFLCK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,583
Number of Sequences: 5004
Number of extensions: 55907
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)