Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2c09
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0205 + 15167902-15168019,15168107-15168162,15168349-151684... 38 0.009
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 32 0.43
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 32 0.43
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344... 32 0.56
08_01_0061 - 428885-428920,429021-429164,429376-429541,429612-42... 31 1.3
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 30 2.3
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 29 5.2
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 28 9.2
>07_03_0205 +
15167902-15168019,15168107-15168162,15168349-15168479,
15168567-15168702,15169145-15169303,15169363-15169431
Length = 222
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 197 TEGVLWLNRALLFFELVFVDILENLQAKKEINMKYVFTKAYEGSVKKYHSWVTQQLF 367
T G+LWL RA+ F +F NL + M + AY ++KK+H W+ F
Sbjct: 94 TNGLLWLTRAMDFLVALF----HNLVQHPDWQMSQACSDAYSKTLKKWHGWLASSSF 146
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 77 WKLQRI---WSTLLRIKKNYKFDENSC 148
WKL + W L++K+NYKFDE C
Sbjct: 2451 WKLDKTEDKWRRRLKLKRNYKFDERLC 2477
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +2
Query: 77 WKLQRI---WSTLLRIKKNYKFDENSC 148
WKL + W L++K+NYKFDE C
Sbjct: 2083 WKLDKTEDKWRRRLKLKRNYKFDERLC 2109
>08_02_1367 +
26432425-26432622,26434071-26434162,26434337-26434403,
26434519-26434638,26434792-26435023,26435525-26435606,
26435985-26436117,26436332-26436537,26436633-26436758,
26437208-26437907
Length = 651
Score = 31.9 bits (69), Expect = 0.56
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 672 YKPLNHCNWCLNFFYYHM 619
Y N N+CLNFF+YHM
Sbjct: 410 YPAENRANFCLNFFFYHM 427
>08_01_0061 -
428885-428920,429021-429164,429376-429541,429612-429742,
429884-429939,430513-430687
Length = 235
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Frame = +2
Query: 83 LQRIWSTLLRIKKNYKFDENSCLLMLMLEEINNGKAP----VTEGVLWLNRALL-FFELV 247
+QR+ L R Y S L ++ EE+ G + T +LWL A+L +
Sbjct: 76 VQRLQDVLARDPSKY-----SSLTAIVTEEVEEGTSKKANSCTRAILWLASAVLRILPIR 130
Query: 248 FVD----ILENL-QAKKEINMKYVFTKAYEGSVKKYHSWVTQQLFIFICKMSP 391
++ +LE L + +++ + KAY ++K +H W++ + K+ P
Sbjct: 131 SINFSKHLLEGLLNTCDQSSLREIVEKAYITTLKPWHGWISSAAYRVAQKLIP 183
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 344 SWVTQQLFIFICKMSPTFAQMIKSFGVDGDIKSFETKLAS 463
+W ++ +F++ + FA ++++ VDGD+ S+ KL S
Sbjct: 340 AWFSRDIFLYRLSKTDFFAVILEATVVDGDLLSWTRKLKS 379
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 266 NLQAKKEINMKYVFTKAYEGSVK---KYHSWVTQQLFIFICKMSPTFAQMIKSFGVDGDI 436
+L KK++N+KY + G K KYHS +T F F + +S +D I
Sbjct: 256 SLDTKKDVNLKYKDDRLILGKAKIFSKYHSEITYYNF--------NFYEAGRSISLDTGI 307
Query: 437 KS-FETKLASFNITLHLNRCKIDDFFKDNN 523
+ + S N + LNR K + + NN
Sbjct: 308 SNELSQEEISINDKMKLNREKTNSSDEYNN 337
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 450 VSKLLISPSTPKDLIICAKVGDILQ 376
V + LI P P+D +C VGDIL+
Sbjct: 61 VQRRLIRPCPPRDDSVCWAVGDILE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,872
Number of Sequences: 37544
Number of extensions: 278253
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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