Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b22
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical ...   233   7e-62
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...   233   7e-62
AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...    49   4e-06
Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical pr...    37   0.013
U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate dehydro...    37   0.013
L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate dehyd...    37   0.013
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    32   0.37 
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    29   3.4  
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p...    29   4.5  
U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF125955-5|AAO12427.1|  273|Caenorhabditis elegans Hypothetical
           protein F46E10.10b protein.
          Length = 273

 Score =  233 bits (571), Expect = 7e-62
 Identities = 117/191 (61%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
 Frame = +1

Query: 160 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 339
           M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+     +LEGVV EL DC
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60

Query: 340 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 519
           ALP L  V+   + + AF  +  AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61  ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120

Query: 520 RKDVKVLVVGNPANTNALICSKYAP-SIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVK 696
           +   KV+VVGNPANTNA I +KYA   IP +NF+AMTRLD NRA +QLA K G  + +VK
Sbjct: 121 KPTTKVIVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVK 180

Query: 697 RVIIXGNHSST 729
            VII GNHS T
Sbjct: 181 NVIIWGNHSGT 191


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score =  233 bits (571), Expect = 7e-62
 Identities = 117/191 (61%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
 Frame = +1

Query: 160 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 339
           M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+     +LEGVV EL DC
Sbjct: 1   MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60

Query: 340 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKVA 519
           ALP L  V+   + + AF  +  AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61  ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120

Query: 520 RKDVKVLVVGNPANTNALICSKYAP-SIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVK 696
           +   KV+VVGNPANTNA I +KYA   IP +NF+AMTRLD NRA +QLA K G  + +VK
Sbjct: 121 KPTTKVIVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNRALAQLALKTGTTIGNVK 180

Query: 697 RVIIXGNHSST 729
            VII GNHS T
Sbjct: 181 NVIIWGNHSGT 191


>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = +1

Query: 622 MTRLDQNRAQSQLAAKIGVPVKDVKRVIIXGNHSST 729
           MTRLD NRA +QLA K G  + +VK VII GNHS T
Sbjct: 1   MTRLDHNRALAQLALKTGTTIGNVKNVIIWGNHSGT 36


>Z49127-1|CAA88944.1|  333|Caenorhabditis elegans Hypothetical
           protein F13D12.2 protein.
          Length = 333

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 433 RKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKEN 612
           ++EG  R  L+  NV IFK     L K +  D  +LVV NP +    +  K +  +P+E 
Sbjct: 100 QREGETRLSLVQRNVEIFKGIIPQLVKYS-PDTCILVVSNPVDVLTYVTWKLS-GLPRER 157

Query: 613 -FTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIXGNHSST 729
            F + T LD  R +  L+ K+ +        II G H  +
Sbjct: 158 VFGSGTNLDSARFRFLLSEKLNIAPSSCHGWII-GEHGDS 196


>U15420-1|AAA67063.1|  333|Caenorhabditis elegans lactate
           dehydrogenase protein.
          Length = 333

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 433 RKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKEN 612
           ++EG  R  L+  NV IFK     L K +  D  +LVV NP +    +  K +  +P+E 
Sbjct: 100 QREGETRLSLVQRNVEIFKGIIPQLVKYS-PDTCILVVSNPVDVLTYVTWKLS-GLPRER 157

Query: 613 -FTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIXGNHSST 729
            F + T LD  R +  L+ K+ +        II G H  +
Sbjct: 158 VFGSGTNLDSARFRFLLSEKLNIAPSSCHGWII-GEHGDS 196


>L43563-1|AAC41613.1|  333|Caenorhabditis elegans L-lactate
           dehydrogenase protein.
          Length = 333

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
 Frame = +1

Query: 433 RKEGMERKDLLAANVRIFKEQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKEN 612
           ++EG  R  L+  NV IFK     L K +  D  +LVV NP +    +  K +  +P+E 
Sbjct: 100 QREGETRLSLVQRNVEIFKGIIPQLVKYS-PDTCILVVSNPVDVLTYVTWKLS-GLPRER 157

Query: 613 -FTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIXGNHSST 729
            F + T LD  R +  L+ K+ +        II G H  +
Sbjct: 158 VFGSGTNLDSARFRFLLSEKLNIAPSSCHGWII-GEHGDS 196


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 192 CCRTNCILTSLSNCVWSSFWTSATCLPPPS*YCAYDGCT*RCCHGVG*LCSATFGWGSS 368
           C +   +  S  N +     ++A+   P + YC YDG T  CC      CS ++  G+S
Sbjct: 470 CIQGTALTDSNGNFIICGGSSAASTTCPANHYCYYDGTTYGCCPTQAYTCSLSYKSGAS 528


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -2

Query: 548 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 384
           P  RT    RAT L+K  P S    R     RS  + P      P   T KA   + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347

Query: 383 SGFAVGRTPAKSGRAQSANSMTTPSSTP 300
            G   G  P+K   A  A++ T+P+  P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -2

Query: 548 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 384
           P  RT    RAT L+K  P S    R     RS  + P      P   T KA   + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347

Query: 383 SGFAVGRTPAKSGRAQSANSMTTPSSTP 300
            G   G  P+K   A  A++ T+P+  P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -2

Query: 548 PTTRTFTSLRAT-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKAS 384
           P  RT    RAT L+K  P S    R     RS  + P      P   T KA   + K +
Sbjct: 288 PAPRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKT 347

Query: 383 SGFAVGRTPAKSGRAQSANSMTTPSSTP 300
            G   G  P+K   A  A++ T+P+  P
Sbjct: 348 VGKVQGTAPSKPAPAAPASAATSPAPAP 375


>AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 551 LPTTRTF--TSLRATLSKAWPCSLKMRTLAARRSF 453
           LPTT+ F  TS   T+ + W C +  + L+++RS+
Sbjct: 42  LPTTQKFRQTSNGRTMKQTWTCGVCRKELSSKRSY 76


>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 490 EQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAK 669
           +Q  ++   + K V   +V  P++T +   + +A S PK    A TRL  +   S+ +++
Sbjct: 42  DQEDSVVDESMKSVNSPIVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101


>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
           protein F54E12.2 protein.
          Length = 1091

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 490 EQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAK 669
           +Q  ++   + K V   +V  P++T +   + +A S PK    A TRL  +   S+ +++
Sbjct: 42  DQEDSVVDESMKSVNSPIVNTPSSTASHCTNSFATSTPKSKSNASTRLGSSYGSSRSSSQ 101


>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 484 FKEQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTR 630
           F + G +  K+   +    V+    N N  IC  YAP     +   MT+
Sbjct: 192 FMQNGSSQTKIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMTK 240


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +1

Query: 484 FKEQGQALDKVARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTR 630
           F + G +  K+   +    V+    N N  IC  YAP     +   MT+
Sbjct: 192 FMQNGSSQTKIVASEKSASVINEKVNHNCNICVVYAPVAATTHVCTMTK 240


>AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical
           protein W02D7.3 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 383 SGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRKTGC 258
           + +A   +P  S  ++S  S  + S+TP   A+SRR    GC
Sbjct: 71  TNYAKRHSPPPSYSSRSKQSSVSSSATPTKSAVSRRNYLAGC 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,512
Number of Sequences: 27780
Number of extensions: 342128
Number of successful extensions: 1160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)