Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b19
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.5  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   9.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.5  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 441 EKAFVYSYGQVGPVPELTDIKTR 509
           E AF Y YG   P  + T+ +T+
Sbjct: 238 EIAFAYKYGDPIPYIQYTETETK 260


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 451 NAFSSGLKVVK*RPWTGQWNI 389
           NAF  G ++     W  +WN+
Sbjct: 271 NAFQGGNQLANLANWGPEWNL 291


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 451 NAFSSGLKVVK*RPWTGQWNI 389
           NAF  G ++     W  +WN+
Sbjct: 272 NAFQGGNQLANLANWGPEWNL 292


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 451 NAFSSGLKVVK*RPWTGQWNI 389
           NAF  G ++     W  +WN+
Sbjct: 272 NAFQGGNQLANLANWGPEWNL 292


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 570 LKTIDGVLYKIHLETFIVNGFASDINGKLY 659
           L+ +D  L K++   F++ G  +D   KL+
Sbjct: 73  LEDLDRSLRKLNSRLFVIRGQPADALPKLF 102


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 5/12 (41%), Positives = 12/12 (100%)
 Frame = -1

Query: 256 LMPEISPNSLVL 221
           ++PE++PN+++L
Sbjct: 155 IVPEVAPNNIIL 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,986
Number of Sequences: 336
Number of extensions: 3871
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)