Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b19
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.6  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.5  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   5.9  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   5.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   7.8  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 557  SGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMEHL 387
            SGV++I++  +  S    F    F   SYL   +D      I +  ++ + G M+ L
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFL 1561


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 347 ICKEFACDKLQHLANV 394
           +CK   CD+L HL NV
Sbjct: 865 VCKAVRCDELMHLKNV 880


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 605 MYFIQDSIDSFQYKYTSGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDK 450
           +Y +  +  +F  +    +SK   V++  + Q CF V  F YR  + V +DK
Sbjct: 40  LYGVASTAKTFLLRTAFDLSKEENVWI--NLQDCFTVAHFWYRILIKVGVDK 89


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = -1

Query: 655 NLPLMSLANPLTIKVSKCILYKTPSIVFSTNIPAELAKYISCFWPTAINLVLMSVSSGTG 476
           N PL      + +  S C+     S +FS  +P  + K+  C     + + L  +   +G
Sbjct: 67  NWPLAKKLRNVAVMGSACLCAGFGSSIFSGAVPEVMVKFHVCRTVALLGISLYVLGFASG 126

Query: 475 P 473
           P
Sbjct: 127 P 127


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 554 GVSKIYIVFLADSNQSCFDVGEFRYRSY-LTVRIDKRFFV 438
           G S  YI F+A + Q+C  V    +R Y L V I  +F V
Sbjct: 363 GFSSAYISFVASTLQACVKVISTTHREYHLAVFIFIQFLV 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,942
Number of Sequences: 5004
Number of extensions: 64530
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)