Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b19
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    30   2.0  
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684...    29   2.6  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    29   3.5  
07_01_0600 - 4462337-4462774                                           29   3.5  
10_08_0328 - 16805296-16806121,16806493-16807274                       29   4.6  
04_03_0521 + 16765347-16767324,16769202-16769392                       28   6.1  
11_01_0099 - 728644-728805,728915-729141,729427-729585,729683-72...    28   8.0  
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874...    28   8.0  

>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
 Frame = -3

Query: 479  RSYLTVR--IDKRFFVRIESREVEAVDGTMEHLPDAVTCHTQILCRFRCVIKCIYPILST 306
            R+ L V+  ++  F  RI  R  E V  T+  L + V C+++I      + +C  PI+  
Sbjct: 1089 RNLLAVKKDLEPEFSCRIIQRIHENVPETVVALDERVECNSKIAVALSLMDECFLPIVDQ 1148

Query: 305  EVH-NVFASII--C-SSYTRIDARNF 240
                N+  +++  C S++ R+D   F
Sbjct: 1149 RTGINLIRNVVYNCGSNFVRMDFHGF 1174


>04_04_0735 -
           27667780-27667887,27668116-27668211,27668346-27668455,
           27668545-27668648,27669279-27669556
          Length = 231

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
 Frame = -3

Query: 518 SNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMEHL----PD---AVTCHTQ 360
           S  +   + E   + Y  +R D RF VR++  +++ V   +EHL    PD    V     
Sbjct: 145 STGNALALSELNLKFYTPLRKDDRFVVRMKVVKIKGVRIIVEHLIETLPDRKLVVDAKAT 204

Query: 359 ILC---RFRCVIKCIYPILSTEVHNVFAS 282
            +C   ++R     ++P LST++H  F S
Sbjct: 205 AVCLDNKYRPTR--VFPELSTKLHQFFLS 231


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 323 YPILSTEVHNVFASIICSSYTRI 255
           YP+  T +H VF+S++C + T+I
Sbjct: 114 YPVALTLLHMVFSSVVCFAITKI 136


>07_01_0600 - 4462337-4462774
          Length = 145

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 65  CFRSRKPRSGSTKR*CAQSIPTRSRLPNQHTVL 163
           CF S  PRS +       S P   RLP +HT++
Sbjct: 33  CFSSMPPRSRAVDAAYCYSAPVHLRLPVRHTII 65


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 240 EISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNL 362
           + SG  S + T+Y+ S H VYL G      F  T +  K L
Sbjct: 407 DFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTL 447


>04_03_0521 + 16765347-16767324,16769202-16769392
          Length = 722

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/77 (23%), Positives = 29/77 (37%)
 Frame = +3

Query: 405 VHGLYFTTFNPDEKAFVYSYGQVGPVPELTDIKTRLIAVGQKHDIYFANSAGIFVLKTID 584
           +H L+      + K    S    GP P++    T L       D   A+   IF L    
Sbjct: 195 IHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTK 254

Query: 585 GVLYKIHLETFIVNGFA 635
           G+    H+   ++N +A
Sbjct: 255 GIAPNKHVFNILINAYA 271


>11_01_0099 -
           728644-728805,728915-729141,729427-729585,729683-729772,
           729783-729849
          Length = 234

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 377 VTCHTQILCRFRCVIKCI-YPILSTEVHNV 291
           +T H  ++ RF+C I CI +  L TE+  V
Sbjct: 1   MTIHVLVITRFQCPISCILHDCLGTEIATV 30


>08_02_1055 +
           23986258-23986459,23986734-23986825,23987389-23987412,
           23987932-23988068,23988533-23988692,23988997-23989006,
           23989449-23989726,23990059-23990136
          Length = 326

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +3

Query: 216 NLNTKEFGEISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 395
           N+  ++    +G      T  D    V+Y G   G+ T            V S+SIW +F
Sbjct: 104 NMKHRDIRRFAGTVPNATTTGDIDSMVMYAGQGVGLITEIIPASEV----VKSWSIWHVF 159

Query: 396 HCP 404
            CP
Sbjct: 160 FCP 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,162
Number of Sequences: 37544
Number of extensions: 359571
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)