Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt2b19
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine re...    28   5.5  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    27   9.6  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    27   9.6  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    27   9.6  

>AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein240 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
 Frame = -1

Query: 646 LMSLANPLTIKVSKCILYKTPS-------IVFSTNIPAELAKYISCF 527
           L ++  P+ +  S CI++KTP+       ++F+T+I + L+ ++ CF
Sbjct: 24  LTAIQVPVFVFGSYCIIFKTPNHMLTVKWLLFNTHIWSSLSDFVICF 70


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 287  ASIICSSYTRIDARNFSELFSVKIQVNGFKNCFPFEQRRVTEEQ 156
            A + C  Y    +R F +LF+V + VN F    P+    V+EEQ
Sbjct: 1239 AKLRCYLYDLTTSRWFKQLFAVLVVVNSFTLVIPW---NVSEEQ 1279


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 287  ASIICSSYTRIDARNFSELFSVKIQVNGFKNCFPFEQRRVTEEQ 156
            A + C  Y    +R F +LF+V + VN F    P+    V+EEQ
Sbjct: 1217 AKLRCYLYDLTTSRWFKQLFAVLVVVNSFTLVIPW---NVSEEQ 1257


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 287  ASIICSSYTRIDARNFSELFSVKIQVNGFKNCFPFEQRRVTEEQ 156
            A + C  Y    +R F +LF+V + VN F    P+    V+EEQ
Sbjct: 1239 AKLRCYLYDLTTSRWFKQLFAVLVVVNSFTLVIPW---NVSEEQ 1279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,383
Number of Sequences: 27780
Number of extensions: 357477
Number of successful extensions: 1010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)