Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt2b18
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 81 5e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 2.0
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 3.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 25 3.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 3.6
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 3.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 4.7
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 24 4.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 4.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 23 8.3
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 23 8.3
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 80.6 bits (190), Expect = 5e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +3
Query: 45 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 212
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S D KF RNQ+F +G ++ +Q
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 18 FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 122
+K+D + +AK + NHN ++ A + I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 76 TKTAKLTEMVSKSQGRPGTN 135
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 3.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 312 FFVFSFYAFICLQLMFISWPLLLG*LF 232
FF+FS + F+C++ F + + LF
Sbjct: 358 FFIFSLFFFLCMRNFFPGFTIYFPALF 384
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 24.6 bits (51), Expect = 3.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 16 DSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 159
D K+ E+ S+ ++I TK KLT K++ R LAW+Q+
Sbjct: 995 DGKF-EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 3.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 33 KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 200
+L+ +A S K H+ + ++K+++NG KK RK +S LR R N+K
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 63 HTNHNQNRKAHRNGIKKPRKTRHES 137
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 4.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 53 LCHFDEFSIHFESED 9
+CHF+E SI ES++
Sbjct: 1 MCHFNELSIEIESKN 15
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 180 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 94
K SL +LD + AW+SL Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 23.4 bits (48), Expect = 8.3
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 49 QSQRIIQIITKTAKLTEM--VSKSQGRPGTNPPLAWIQ-NF*GIKGFARRVT*SQPSNSR 219
Q++ II ++ +A L+E+ +S+S G+ +I N I+ F+ +T P NS+
Sbjct: 797 QAESIISSLSSSA-LSELSYISESSMNIGSRLDERFIDANGVAIRDFSAELTYLTPENSK 855
Query: 220 GRL 228
G+L
Sbjct: 856 GKL 858
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 234 FSQPPSRVAWLASGY 190
FSQPP R A SGY
Sbjct: 138 FSQPPFRFALFFSGY 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,505
Number of Sequences: 5004
Number of extensions: 22124
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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